Vigna angularis (adzuki bean): 108341274
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Entry
108341274 CDS
T04660
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108341274
09123 Folding, sorting and degradation
03018 RNA degradation
108341274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108341274
03041 Spliceosome [BR:
var03041
]
108341274
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108341274
mRNA cycle factors
Stress granule specific factors
108341274
Spliceosome [BR:
var03041
]
Complex C
Other components
Complex C specific factors
108341274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RRM_RdRP1_2
RBD_DEAH11
DUF4875
Motif
Other DBs
NCBI-GeneID:
108341274
NCBI-ProteinID:
XP_017434459
UniProt:
A0A0L9V8T6
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All DBs
Position
4:39193557..39196270
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AA seq
593 aa
AA seq
DB search
MAQVPDNDSSEETNSRFHTTLYVGDLDETIDESQLFIIFDHVAKVVSVRICRDYATGKSL
GYAYVTYSSRYNAAKAIKELNFVSVNGKTIRVTYSNRDPSVRKSGRANLYVKNLAPSIYH
KALYDLCSSFGNILSCTVATDASGQSKGYGFVQFESEASAKEAIEKLNGTLLKDKKIYMG
PFVSKQDRVNSDASFSNVYVKNLSDTITDAELQNIFGEYGDITSAVVMRHTDGRSKGFGF
VNFANADNAARARDGLDGQTYHGKTWCVRRAQKKTERERELTEQYDQNRGIFSPRQGRNL
YIKNLDNRIDDDTLKKIFCEFGIIISAKVMRDANGRSKGVGFVAYSSREAANQAIVLMHG
RVVAGKRLYVAFAQKRAERRAMLEAHFSQNRAAPPAPFPEPQFPMYPIRAPALGSRNLNS
QTHQTLISQEELDYHLQNLPRLEMATGPPFSFLMPQRGPPRPRGHRPPGLGQPLVSHQQT
IPRGNFFQGPRRPNVQNSEMVPFNLGQPVPPQTLASAVANAPPVEQRNVLGEILFPLVQR
LVHNAAPKVTGMLLELDQAEVLHMIQSANALEEKVAEAIAVLRRHAEERSNRR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagttcctgacaatgatagcagtgaagagacgaattccaggttccacacgacg
ttgtacgtaggggatcttgacgagaccatcgacgagagccagctctttattatcttcgat
catgttgcaaaagtcgtttccgttcgaatttgccgcgactacgcaactgggaagtccctt
ggttacgcctacgtgacttacagtagccgttacaatgccgctaaagcaataaaagagcta
aatttcgtttcggtgaatggcaaaaccattagggtaacgtattctaatcgggaccccagt
gttcgtaagagtggtagagctaacctttatgtaaagaatttggctccgtcaatctatcac
aaggctctatacgatctctgttcgtcttttgggaatattctatcttgcacggttgcaacg
gatgcttctggccagtctaaaggttatggttttgtgcagtttgagagcgaagcatctgca
aaagaagcgattgaaaagttaaacggcacgctgctcaaagataaaaagatctatatgggt
cctttcgtgtcaaagcaggacagagtgaatagtgacgcaagcttttcaaatgtttatgtt
aaaaacctgtcagacacaataacggatgctgagttgcagaatattttcggagaatatggt
gatattacaagtgctgtagtgatgagacatacagatggtagatcaaaaggttttggtttt
gtgaattttgcaaatgcagacaatgctgctagagctcgggacggtcttgatggacagacc
tatcatggtaagacttggtgtgttagaagagcccagaaaaaaactgaaagggagcgtgaa
ctgacagagcaatatgaccagaatagggggattttctctcctaggcaaggtagaaacttg
tatataaagaacttggacaataggattgatgatgacactcttaagaaaattttctgtgag
tttggtataataatctcagccaaggttatgagagatgcaaatggaagaagtaaaggagtt
ggatttgttgcatactcaagtcgggaggcagcaaatcaggctattgtgttgatgcatggt
cgagtagttgcaggaaaacgtctatatgttgcctttgcacagaaaagggcagagagaaga
gcaatgttagaggcacatttttcacaaaatagggctgctccaccagcaccttttcctgaa
cctcaatttccaatgtatcctatacgggctcctgcgctaggatcacgaaatttaaatagc
caaacacatcaaactttaatatcacaagaagaacttgattaccacctgcagaatcttcct
cgcttagagatggcaactggtcctccattttcattcttaatgcctcagcgtggacccccg
cggccaagaggacaccgaccaccaggtcttgggcaaccgctcgtgtcacaccagcagacg
attccacggggaaatttttttcaaggtcctcgtcgtcccaacgtgcaaaatagtgaaatg
gtcccctttaaccttggtcagccagtgccacctcagaccttggcatcagccgttgccaat
gctcctcctgtagaacagaggaatgtgcttggtgaaattttattcccgttagtacaaagg
ctggtgcataatgcagcaccaaaggttactggtatgcttttagagctggaccaggctgag
gtgttacatatgattcagtcagcaaatgctctggaggaaaaggttgcggaggccatcgct
gtactgagacgacatgcagaagagcgatcaaacaggcgctga
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