Vigna angularis (adzuki bean): 108342813
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Entry
108342813 CDS
T04660
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108342813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108342813
03012 Translation factors [BR:
var03012
]
108342813
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108342813
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108342813
Translation factors [BR:
var03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108342813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_3
HA2_C
DEAD
Helicase_C
HA2_N
OB_NTP_bind
Ank_2
Ank_5
nSTAND3
AAA_22
ATPase
AAA_19
AAA_7
ANK_LRRK2
ABC_tran
R3H
Rad17
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
108342813
NCBI-ProteinID:
XP_017436115
UniProt:
A0A8T0K4I0
LinkDB
All DBs
Position
6:complement(8534190..8560241)
Genome browser
AA seq
1651 aa
AA seq
DB search
MANTDEAEPSCQFDIPESFIDENSEVLREKYLKILKEFIASNDQAYVFHGNLSSEERKVV
DRLCHLMELGVRFCGTAGEQKIIAFKVNNEASNHIQAVLSRKRKNREESEACGENADICE
LNKIWISQTLEKFAASNDEVYTFENKLTGQEDDLVYNFCRERGFIYTLSWNGIKQRVCVR
KTREEVDNTTLVENLSHVTCSDESDQIDKLKQSEKKVEREPESAQHQNFIVIEPKGVRMD
PISKKEVATTRVSGCHPCITFPEQSTPNRKETVASRHQNPIIDESTRIRISQTSEKFSTS
KVNKFEASLSSEKCFAVQLSQEMGFRVENSGSGMRQKTSVQETEKNIYTTAMLENLPFFT
FSGQSKRVLADLLEQYPPGDGELWRTMIEAFGDTTDRTEEKEDDVFRRPCMSKVEITKRL
EILSEGTKDSFKLKLINEKRSKLPITSFKDMITSTVESHQVVMICGETGCGKTTQVPQYI
LDHMWGKGEVCKIICTQLQSVSAISVSKRISSERGEVIGNDVGYKVQFESEGGRHSSIVL
CTPGVLLKALASTSSHFSKRQHVQGGISNITHIIMDEIHERESYSDLMLAILREILPSNP
HLRLILMSGSFDATRFSQYFGACPIIYVPGLTYPVKNYYLEDVLSIVKSGADNHGLSQVE
KLSLDEAIHLAWSNDAWCSLLELVYSKARPKVFDYQHSLTGLNPLMVFAGKGKVGDMCML
LSLGANCHLKAKDGTTALEIAEKEHQPVAVELLKKHMNNDFSVKEEKNLLDKYLATANLK
DVDVVLIEQLLRKICVDSKDGSIIVFLPGWDEIVRTRERLLSSSFFNKRSKFKVVSLHSM
VLASEMNEAFMPAPHGCRKIVLSTNIAETAVPLDDLVYVIDTGLIKEKSYDPCKNLFTLQ
SSWISKASAKKREGCASRCHPGACYHLYSKVQADSLLDFQDPEIKRMPIEELCLQVKLFD
PTCKIEEFLSQTLDPPGFESIRSAARVLQEIGALSVDEHLTELGQKFGYLPVHPYTSRML
IFSILMNCLDPALTLACASKCKDLFVLPILPDEKKRAAAARSELASLYGGCGDQFSIIAA
YQCWVNSKKMGLESRFCSQYFVSQSAMSKLDVMRKNLAAELYRNGLINRSSRNYCSNAYD
PGILQAVLVAGMYPMVGKLFFPYGSGKKILVNTKSIDSVCLNSHTLNYKLSSQKILDCSF
VVYDEITSIDRGLCIGDSTTVGLFPLFLLSKEIDVDNAKDCTDNIITVIIDGWLYFESTA
FDAFHMNYLRELLTAAIIYKVTYSTDVLSPVLQAAVDSLACILSCHGRSCISLISDCAMK
QTTTNATNTKKFQTQLINQDAHQTSPSQVKASEPEAIENSINQTSKNARIGLACSNPTKK
TVMTLEGFCTGLINHNDVPSRASKFTGAEKPRDPTRRNTETGSARSIQTAHLNDDVTMTD
VRASRQPHQQKKYYYWHGACYEKIWVGWSFPEVGWIKANVDGSYKLEEHLTSCGGVFRDH
TGSWCFGFTLNLGTFCFGSSDPTSNDFSVQSELWGVLTALKLAKEKKISQLWIESDSVDA
VDCVLNKRAEKHDLYTPLVQSILELIEGNWKVRISHSYREGNQVADWLSKYGHSKEIGLR
VYDAPPKGVKKLLIRDYSGVSKQRYVRLTAR
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaccgatgaggccgagccgtcatgccaatttgacattcccgaatccttcatc
gacgaaaactccgaagttctccgggaaaagtatttgaaaattctgaaagaatttatagcc
tccaacgatcaagcttatgtgttccatggtaacttgtctagtgaagagcgcaaggtagtg
gaccggttatgccacctcatggagttaggtgtaagattctgtgggactgcaggtgagcag
aaaataattgctttcaaagtgaataacgaagcctcaaatcatattcaggccgtcctgtcc
aggaaaaggaagaacagagaggagtcagaggcgtgtggtgagaatgcagatatttgtgaa
ttgaataaaatctggatttcccaaacattagaaaaatttgcagcttcaaacgatgaagtg
tacacttttgaaaataaattgactggtcaagaagatgatttagtgtataacttttgcaga
gaaagaggttttatatatactctttcttggaatgggattaaacagagagtatgtgtgcgt
aagaccagagaggaagttgacaatactaccttggtagagaatctttctcatgtcacttgt
tcagatgaatcagatcagattgataagctgaaacaatctgaaaagaaagttgagcgagag
ccagagtcagctcaacatcagaatttcattgttattgaacccaaaggggttcggatggat
ccgatttccaaaaaggaggttgctaccaccagggtgtcgggttgtcatccttgcatcaca
tttcctgaacagtcaactccgaatagaaaggagacagtggcatcacgacaccaaaatccc
attattgatgaatcaacaaggattcggatttcccagacatcggaaaaattttcaacatca
aaagtaaacaaatttgaagccagcttgtcttctgaaaaatgttttgcagtgcaattatcc
caggaaatgggatttagagtggaaaattcagggagtgggatgaggcagaaaacatctgtg
caggaaactgaaaagaatatttacaccactgctatgttagagaatcttccttttttcaca
ttttctggacagtcaaagcgtgtattagcagatttacttgagcaatatcctcctggcgat
ggggaactctggcgaacgatgattgaagcatttggtgacactactgatagaacagaagaa
aaggaagatgatgttttcaggaggccttgtatgagcaaagttgaaattactaagagactg
gagattctttctgaaggaacgaaggattcctttaaattgaaactgatcaacgaaaagaga
tctaagcttccaatcacatctttcaaggacatgattacatcaactgttgaatctcaccag
gtagttatgatatgtggtgagactggttgtggaaagactactcaggtcccgcaatatata
ttggatcacatgtggggtaagggtgaggtctgcaaaataatttgcactcagctgcaatct
gtatcagcaatttcagtttctaagagaatctccagtgagagaggagaggttattggaaac
gatgtgggatacaaggtacagtttgaaagtgaaggtggaaggcactcatcaattgtgctc
tgtactcctggagttctattgaaggctttggcttctacgagttcccatttttcgaagaga
cagcatgtgcagggtggcatttctaatattactcacataattatggatgagattcacgaa
agggaaagctactcagacctcatgttggcaatcctcagagaaatcctgccttcaaatccc
cacctacgtctgatactgatgagtggtagttttgatgctacaagattttctcaatatttt
ggtgcctgcccaattatctatgttccagggctcacgtatccggtaaaaaattactacttg
gaggatgtactttctattgtaaaatcaggtgcagataaccatgggcttagtcaagtagaa
aagctgtctctagatgaagcaatacatttggcttggtctaatgatgcctggtgctcacta
ttagagcttgtttatagtaaagctaggccaaaggtctttgattatcagcattcattaact
ggcctcaatccattaatggtgtttgctggaaaaggtaaagtgggtgatatgtgcatgctc
ttatcattaggggctaactgccatttaaaggccaaagatggaacaactgctttagagata
gctgagaaagaacaccagccagtagctgttgaattgctgaagaagcacatgaataatgat
ttttctgtcaaagaagagaaaaatttactagataaatatcttgcaacagccaaccttaaa
gatgttgatgttgttctgatagaacaacttttaagaaaaatatgtgttgattcaaaagat
ggaagcatcattgttttccttccaggctgggatgagatagttagaacacgtgaaagattg
ctttcatcctcatttttcaataaaagatcaaagtttaaggtggtatctctgcattcaatg
gttctagcctctgagatgaatgaggcttttatgcccgcaccccatggttgtcgcaaaatt
gttctgtctaccaatattgctgaaactgctgtccctctggatgatttagtgtatgttatc
gacactgggcttatcaaagaaaaaagttatgatccttgcaaaaatttgtttactctccaa
tcatcttggatttcaaaagctagtgctaagaaaagagagggatgtgccagtcgctgtcat
cctggagcttgttatcatctatattcaaaagttcaagcagattctttgttagattttcag
gatcctgaaattaagagaatgcctattgaggagctgtgtttgcaggttaagttgtttgat
ccaacctgtaaaatagaagaatttttgagtcagacattagatcctcctggttttgagtct
attcgaagtgctgctagagttcttcaggagattggggcattgtcagttgatgaacacctg
acagagctagggcagaagtttggctatcttcctgttcatccatatacgagcaggatgctt
attttttccatattaatgaattgccttgatccagctttaacacttgcatgtgcatctaag
tgtaaagatctatttgtgcttcctattttacctgatgaaaagaagagagctgcagctgct
agatctgagcttgcttcgttgtatgggggttgtggtgatcagttttctataatagcagca
tatcaatgctgggttaattcaaagaaaatgggtctagaatcacggttttgttctcagtac
tttgtttctcaaagtgcaatgagcaagttagatgtcatgcggaagaatttagctgcggaa
ctatataggaatgggcttattaataggagtagtagaaattattgctctaatgcctatgat
cctggtatacttcaagctgttttggtagcagggatgtacccgatggttgggaaattgttc
tttccttacggaagtggaaagaagattcttgttaacactaaaagtatcgatagtgtttgc
ttgaatagtcatactttgaattataagttgtcttcacagaaaattcttgattgctctttt
gttgtatatgatgagattactagcatcgaccggggcttgtgcataggggacagtaccact
gttggactatttccattatttttgctttccaaagagattgatgttgataatgcaaaggat
tgtactgataatataatcacagtaatcatagatggatggctttattttgagtcaacagca
ttcgatgcttttcacatgaactacttgagagagctattaacagcagcaattatatacaaa
gtgacatattcaacggatgttctttctcctgttctacaagccgcagtggattccctagct
tgcattctttcttgtcatgggcgttcttgcatatcactcatctcagattgtgctatgaaa
cagactacaacaaatgctactaatacaaaaaaattccaaacacagcttataaatcaagat
gcacaccagaccagtccatctcaagttaaggcatctgaacctgaggccattgaaaattca
attaaccagacaagtaaaaatgctcgaataggtttggcttgttcgaatccaacaaagaaa
accgtcatgactcttgaaggattctgtacagggcttataaatcacaatgatgtgccttct
agagctagcaaattcacaggtgcagaaaagcctagggatcccacaagaaggaacactgaa
acaggttcagctcgttcaatccagacagcacatttaaatgatgacgtaaccatgactgat
gtgagagcttctagacaaccacatcaacaaaaaaagtattattactggcatggggcttgc
tatgaaaagatctgggttgggtggtcctttcctgaggtgggatggattaaagctaatgta
gatgggtcttataagcttgaagaacatcttactagctgtggtggagttttccgtgatcac
acaggttcttggtgttttggcttcacgttaaatcttggaacattctgtttcggatcatca
gatccaacgtctaatgactttagtgtgcaatctgaactgtggggtgtcctgactgccctg
aagcttgctaaggagaaaaagatttcgcagctgtggattgagtctgatagtgttgatgca
gtggactgtgttctgaataaacgggcggaaaaacatgatctttatactcctcttgttcaa
tcgatacttgagttgattgagggaaattggaaggttcgaatctctcatagttatcgtgaa
ggaaaccaagtggctgactggttgtcaaaatatgggcatagtaaggagataggtctccga
gtgtacgatgcccctcccaaaggggtaaaaaaactattaattcgggactattctggagtc
tctaaacaacgatatgtacgtctcactgcaagatga
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