Vigna angularis (adzuki bean): 108342979
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Entry
108342979 CDS
T04660
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108342979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
var03021
]
108342979
03019 Messenger RNA biogenesis [BR:
var03019
]
108342979
Transcription machinery [BR:
var03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108342979
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108342979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Torus
Motif
Other DBs
NCBI-GeneID:
108342979
NCBI-ProteinID:
XP_017436429
UniProt:
A0A8T0KAH6
LinkDB
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Position
6:complement(29951505..29962571)
Genome browser
AA seq
696 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPAPSAADPASV
NVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQR
GSSYAQQAEKSQLPQGTNSTNQVVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNVANG
QPNQASRSATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVI
LIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRH
LRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVN
PDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGA
RPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMM
FRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQN
TNRLAKRDQRATDRNDRYGSGSEQGKSQDMLSQSGAPDDDTQYQQGYKANQDDHPAVNNF
RNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggtggcctcgacaccgctccc
tccgccgccgccgctccctctggtccactcgtccaacatgactcctccgctgccgcttcc
gccgtttccaatggaggtcctcccgccccggccccctccgcagccgaccccgcatccgtc
aacgttcccggccgacggagcttccggcagacggtatgccggcactggctgcgcagcctg
tgcatgaagggcgacgcgtgcgggtttctgcaccagtacgacaaggcgcggatgcctgtt
tgtcgattcttcaggctctatggagagtgtcgggaacaggattgcgtgtataaacacacg
aatgaagacatcaaggagtgtaacatgtacaagttgggattttgtcctaatgggcctgat
tgccgatataggcatgcaaaatctcctggacctccacctcctgttgaagaggtccttcag
aagatccaacatttatattcctacaattataattcatctaacaaatttttccaacaaagg
ggttccagctatgcccaacaagctgaaaaatcccaacttcctcaaggaacaaactctaca
aatcaagtggtgactggaaaaccattgccagcagagtcaggaaatgcccagccacagcaa
caagttcaacagtctcagcagcaggtcagccagagccaaatgcaaaatgttgctaatggc
cagcctaatcaagccagtagatctgctacccctttacctcaaggaatatctaggtatttt
attgttaaaagttgcaatcgtgaaaatttggagttatctgtacaacaaggagtatgggca
actcaaaggagcaatgaatccaaactaaatgaagcatttgactctgtggaaaatgtgata
ttgattttctcagtcaaccgtactagacatttccagggttgtgcaaagatgacatccaga
attggtggttctgttgctgggggtaactggaaatatgctcatggaactgcacattatggg
cgaaacttctcagttaaatggttgaagttatgtgaattgtctttccacaaaactcgccat
ttaaggaatccatacaatgagaacttaccagtgaagataagtagagattgtcaagagctg
gagccctctattggagagcaactggcatcattgctttatcttgagccagatggtgaactt
atggccgtttcagttgcagccgagtctaaacgggaagaagaaaaagcaaagggagtgaat
ccagataatggaggagaaaatccagatattgttccatttgaagacaatgaagaagaggaa
gaggaagaaagtgatgaagaggaggagagctttggtcatggtgtagggccagctggtcaa
ggcaggggtaggggcagaggtatgatgtggccacctcacatgccccttgggcgtggagcc
cgacccatgcctggaatgcagggctttaaccctgtaatgatgggtgatgggttatcctat
gggccagttgcacctgatggttttggtatgccagatctttttggtgtgggaccccgtgct
tttgcaccatacggtcccaggttctctggtgattttggaggtcctccagcagccatgatg
tttcgaggacgaccttctcaaccagggatgtttccaggtggtggttttgggatgatgatg
aatcctggacgtggtcccttcatgggggggatgggggttgcaggggcaaatccgccaaga
ggtggtaggccggttaatatgcctccaatgtttccaccacctccacccctacctcagaac
acaaaccgtcttgccaaaagagatcaaagagctactgatagaaatgataggtatggttcc
ggatcagagcagggtaagagtcaagacatgctcagtcaaagtggtgcacctgatgatgac
acgcagtatcagcaaggatacaaagccaaccaggatgatcatcctgctgtcaacaacttc
cggaatgatgacagtgaaagtgaagatgaagcacctaggaggtcaagacatggagagggg
aaaaagaaaaggcggggcccagaagatgtcaatacaaactataatcattag
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