Vigna angularis (adzuki bean): 108343033
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Entry
108343033 CDS
T04660
Name
(RefSeq) uncharacterized protein LOC108343033
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108343033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108343033
03041 Spliceosome [BR:
var03041
]
108343033
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108343033
Spliceosome [BR:
var03041
]
Complex B
Other components
Prp19-related factors
108343033
Complex C
108343033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_8
TPR_19
NRDE-2
ARM_TT21
UTP6_C
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
108343033
NCBI-ProteinID:
XP_017436538
UniProt:
A0A0L9VFK7
LinkDB
All DBs
Position
6:35806725..35813842
Genome browser
AA seq
918 aa
AA seq
DB search
MAIAQDLYPSEDDLLYEEELLRNPFSLKLWWRYLIARSEAPFKKRFVIYERALKALPGSY
KLWHAYLRERLDLVRNLPVTHSQYDTLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR
TRRTFDRALCSLPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
LNSSLWQEASERLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDPIIRGG
IRKFTDEVGRLWTSLSEYYIRRGLHEKARDVFEEGMSTVITVRDFSVIFDSYSQFEESML
AYKMEEMGLSDEEDDEGEENGFEEVEEEDIRVKGRLVEEDFERKILHGFWLNDKNDIDLR
LARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKA
VGKPHTLWVAFAKLYEQHKDLANARVIYDKAVQVNYKTVDNLASVWCEWAEMELKHKNFK
GALELMRRATAEPSVEVKRKVAADGNEPVQMKLHKSLRLWTFYVDLEESLGSLESTCAVY
ERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWITYLSKFVKR
YGKNKLERARELFENAVESAPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNE
KLSMYEIYISRAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARA
VYVFASQYADPRSDPEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLM
QKDQTVNLDEAKDKLKQAGIPEDEMAALERQLAPAAADNTVTKDRKVGFVSAGVESQSDE
GIKTNSNHEDIELPEESDSDDDDDKIEIAQKDVPSAVFGGLIRKRDEDEKNGEVDAAKDK
DNENRLGALERIKRLKRN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgcgcaagatttgtatccctcagaagacgaccttttgtacgaagaggagttg
cttcgaaaccctttcagccttaagctatggtggcgttacctaattgcgcgttcggaagct
ccgttcaagaagcgcttcgtgatttacgagcgggcactgaaagcgcttcccggaagctac
aagctgtggcacgcgtacctccgcgagcgcctcgacctcgttcgcaacctccccgtcact
cactctcaatacgatacgctcaataataccttcgagcgtgcattagtcaccatgcacaag
atgccgcgaatttggattatgtatctgcaaaccctaaccaatcagaaattggttactcga
actcgcaggaccttcgacagggctctctgctccctccccgtcacccagcacgaccgtatc
tgggaaccttatcttgtgttcgttagccagaagggtattccaattgagacttctcttcgg
gtttatcgcaggtatttgaagtatgatccttctcacattgaggattttattgaatttttg
cttaattcgagtctctggcaagaggcttctgagaggctggcttcggtcctcaatgatgac
cagttttactccattaagggtaagaccaagcaccggctttggttggagttatgtgatttg
ctcactcgccatgccaatgaggtttctgggttgaatgtggaccctatcattaggggtggg
attaggaagttcactgatgaggtgggtaggctttggacttcgctttctgagtattacatt
aggaggggtttgcatgagaaggctagggatgtgtttgaggagggtatgtctactgttatc
acggtcagggattttagtgttatatttgattcttactcgcagtttgaagagagcatgctt
gcttacaagatggaggagatggggttgagtgatgaagaagatgatgagggtgaggaaaat
ggctttgaggaagtggaagaagaggatattcgtgtcaaaggaagattggtggaggaggat
tttgagaggaagattttgcatgggttttggttgaatgacaagaatgacatagacttgagg
ttagctcggtttgattaccttatggagaggaggccggaattggctaacagtgtgcttttg
cgtcaaaatcctcataatgtagaacagtggcacaggagggtaaagctctttgaagggaat
cctaccaagcagatactgacttacactgaagcggtgaggacgattgatcccatgaaggca
gtgggaaagcctcacactttgtgggttgcgtttgctaaactgtatgaacagcacaaagat
cttgccaatgcccgtgtcatatatgacaaggcagtgcaggtgaactacaaaactgtggat
aacctggctagtgtctggtgtgagtgggctgaaatggagttaaagcataaaaatttcaaa
ggagcacttgagctgatgaggcgggctacagctgagccgtcagttgaggtgaagcgaaaa
gtggctgcggatgggaatgaaccagtccagatgaagctacacaaatccttgagattgtgg
acattctatgttgatttggaggaaagtctaggttctttggaatctacatgtgctgtttat
gagcgaattttggatttacgaatagccacaccgcaaataataatcaattatgcatacttt
ttggaggaacataagtactttgaagatgcttttaaagtttatgaaagaggagtaaagatc
tttaagtaccctcatgttaaagacatatggattacttatctctctaaatttgtgaagaga
tatggaaagaataaattggagcgagcaagagaattatttgaaaatgcagttgaatcggct
ccagctgatcaagtgaagccactttacctgcaatatgccaagctggaggaggactatggt
ctagctaagcgagctatgaaggtttatgatcaagcaactaaggctgttcctaacaatgag
aagttaagcatgtatgagatatacatttctcgtgcagctgagatatttggtgtgcccaaa
acaagagagatctatgagcaggcaattgaatctggtctcccagataaggatgtcaaaacc
atgtgtttgaagtatgctgaactggagaaaagcttgggagaaattgaccgggcccgtgca
gtatatgtatttgcatctcagtatgcagatccacgatctgatcccgagttttggaataag
tggcatgagtttgaggttcagcatgggaatgaagatactttcagagaaatgcttcgtatt
aagcgaagcgtctctgcaagctacagccagacacattttatactgcccgagtatctaatg
cagaaggatcaaactgtgaatctcgatgaagccaaagacaagttaaaacaggctgggatc
cctgaggacgaaatggctgctttagaaaggcaattagcaccagcagcagctgacaatact
gtgacaaaagatagaaaagttgggtttgtgagtgctggagtggaatctcaatctgatgaa
gggataaaaactaattcaaatcacgaggatattgagttaccagaagaaagtgattctgat
gatgatgatgataagattgaaattgcacaaaaagatgttccttctgctgtgtttggtggt
ttgattagaaagagagacgaggatgaaaagaatggagaggtagatgcggcaaaagataag
gataatgaaaatcggcttggtgctcttgagagaataaagaggctaaaacgaaattaa
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