Vigna angularis (adzuki bean): 108343387
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Entry
108343387 CDS
T04660
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108343387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
var03021
]
108343387
03019 Messenger RNA biogenesis [BR:
var03019
]
108343387
Transcription machinery [BR:
var03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108343387
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108343387
U7-dependent histone pre-mRNA processing factors
108343387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
108343387
NCBI-ProteinID:
XP_017437127
UniProt:
A0A0L9VGI9
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All DBs
Position
6:complement(37849785..37852367)
Genome browser
AA seq
690 aa
AA seq
DB search
MSSWTKKRGESVVGSSREEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPAYSGM
AALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDF
VKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIA
GVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGIQHHQPRHTREKRFTDVIHSTI
SQGGRVLIPVFALGRAQELLLILDEYWENHPELQNIPIYYASPLAKKCLTVYETYTLSMN
DRIKNAKSNPFSFKHVSALSSIDVFKDVGPSVVMASPGGLQSGLSRQLFEMWCSDKKNAC
VLPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPP
NIILVHGEANEMGRLKQKLITQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTP
EVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTASITQRITIPYSCAFNVIRHRLKQIYE
SVEQSVDEESGVPTLQVHDYVTVKQESEKHVSLHWAADPISDMVSDSIVALILNISRDVP
KVMDEADAIKIEEESEKKAEKVMHALLVSLFGDVKIGENGKLIINIDGNIAELNKESGEV
ESENEGLKERVKTAFRRIQSSVKPIPLPAP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttggacgaagaaacgcggggagagtgtggtcggaagcagcagagaggaagat
cagcttatagtgactccattaggcgccggtaatgaagtgggacgttcgtgcgtgtacatg
acctacaaaggcaaaaccgttttgttcgattgcggaatacaccctgcctactccggcatg
gctgcgttgccctatttcgatgagattgacccttccaccgtcgacgtcctcctcatcact
cacttccacttggaccacgccgcttccttgccctactttctcgaaaaaaccacctttcgc
ggccgcgttttcatgacctacgccaccaaggccatttacaagctcctcttgtctgatttc
gtcaaagtcagtaaggtctccgttgaagacatgctttacgacgaacaggacatcaaccgc
tccatggataaaattgaggtgatagatttccatcaaacattagaagtgaatggcattcga
ttctggtgttatactgcaggccatgtccttggtgctgctatgttcatggttgacatagct
ggtgtccgagtgctttatactggagactattcacgcgaggaagatcgccatctccgagct
gctgagaccccacagttctcccccgatgtttgcattatagagtccacctatggtatacag
caccatcagcctcggcacacacgagaaaaacgcttcactgatgttattcactccaccatt
tctcagggggggcgtgtgttgattccggtatttgcccttggtcgtgcacaggagctcctt
ctgatccttgacgagtattgggaaaatcatccggaactccagaatatacccatctattat
gcatctccacttgcaaaaaaatgtttgacagtttatgaaacgtacaccctttccatgaat
gacaggatcaagaatgcaaagtcgaatcctttttccttcaagcacgtatcagctttaagt
agcattgatgttttcaaagatgtgggaccatctgttgtgatggcaagtcctggtggactt
cagagtgggttgtcacggcaactgtttgaaatgtggtgctctgataagaaaaatgcttgt
gttttacctgggtatgttgttgaagggacattggcaaaaaccatcatcaatgaacccaag
gaagttactctcatgaatggactcactgcaccacttaacatgcaggtgcactacatttcc
ttttctgctcacgctgactctgctcaaacaagtgcattcttagaagagctcaatcctcct
aacataattcttgttcatggggaagctaatgagatgggcaggctcaaacagaagcttatc
actcaatttgctgatcgcaacactaaaattcttactcccaaaaactgtcaatctgttgaa
atgtatttcaattcccagaaaatggcaaaaaccatagggaagctagctgagaaaacaccg
gaagttggtgaaaccgtcagtggtttgctggtaaaaaaaggcttcacataccagataatg
gcacctgatgatctccacgtcttctcacaactatcaacagccagcatcactcagagaatt
accattccttattcttgtgcctttaatgtcattcggcatagactaaaacagatatacgag
agtgttgagcagtcagtggatgaggaatctggagttccaacattgcaagtccatgactac
gttactgtgaagcaagaatctgaaaaacatgtctccttgcattgggcagcagaccccatt
agtgacatggtatcagattcaattgttgctctgattttaaatatcagccgtgatgtccca
aaagtaatggatgaagcggatgccatcaaaattgaggaagagagtgagaagaaggcagag
aaggttatgcatgccctcctcgtctcactctttggagatgtgaagataggtgaaaatggt
aaattgattataaacattgatgggaatatagcagagctcaacaaagaaagtggggaagtt
gagagtgaaaatgaaggtctcaaggaaagagtaaagacagcattccgccgtattcagagt
tctgtgaagccaattcctcttcctgcaccataa
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