Vigna angularis (adzuki bean): 108343536
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Entry
108343536 CDS
T04660
Name
(RefSeq) uncharacterized protein LOC108343536
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108343536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108343536
03400 DNA repair and recombination proteins [BR:
var03400
]
108343536
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108343536
Messenger RNA biogenesis [BR:
var03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
108343536
DNA repair and recombination proteins [BR:
var03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
108343536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Helicase_Sgs1
PTEN2_C2
Motif
Other DBs
NCBI-GeneID:
108343536
NCBI-ProteinID:
XP_017437370
UniProt:
A0A0L9VCG5
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All DBs
Position
6:24642198..24652343
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AA seq
917 aa
AA seq
DB search
METVPSVLKKYFGFSHFRPYQREVIEKIIERRDCLVVMATGSGKSLCYQVPPLVVKKTGI
VVSPLISLMQDQVMALKQRGIRAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACTVPTS
FWTNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRF
DIISSLKMDNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVATGGSTIIYCTT
IKDVEQVFKSFTEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNI
RQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAVM
ESLLAAERYCVLTTCRRKFLLEYFGEKISADRCGNCDNCKVSKKERDMSREAFLLMACIH
SCNGRWGLNMPIDVLRGSRAKKVLEVQFDKLPLHGLGKNYPANWWKSLGHQLISQGYLKE
TVSDVYRTISVSSRGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQDEFKTLSTSELD
GFSEAERKLHQMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANINGVNQH
LVMKYGDHFLQVIQKLSQGLNLSLDGEERVPTASLQTNTVTKVSPLTNKSKKLTSAKFEA
WKMWHEDGLSIHDIANLEVRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIMS
EIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNCGISLETNQSGSNQTGKDDEL
AHNASNLSDCTLETCPDRQCEDDISVKGLAEQSDIEMDEVPSLPVNGSEEQNISNAREGE
FTRKRQRVSETEEVNSTRLKATVSSVVEWMKNLDEGATLSNILEHFNGSSEDSVVELLNC
LECDFLIYRKGNVYRVL
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgttccctctgttctcaagaaatactttgggttttctcattttcggccttat
cagagagaagttattgagaaaattatcgagagaagggattgtttggtagtcatggctact
ggtagtgggaagtccttgtgctatcaggtacctcccttggttgttaaaaagactgggata
gttgtgagccctctcatatcgttaatgcaagaccaggtgatggctttaaaacaacgaggt
attagagctgaatatcttggaagtgctcagaaggatttcactgtgcactctaaagccgaa
cgtggtcaatttgacattctgttcatgactcctgagaaggcatgcacagttcctaccagt
ttctggaccaacttactaaaggctggaattagtctttttgctgttgatgaagcccattgc
atatcggaatggggacatgattttagggtggaatacaagcatttagacaagttacgtgag
gtcttgcttgatgttccttttgttggtctaactgcgactgctactgaaaaggttcgattt
gacatcatcagttccctgaagatggataacccttatgttacgattggttcatttgatcgc
acaaatcttttctatggtgtcaaactattgaaccgtggacaatcttttattgatgagctt
gtgcgggaaatttcaaaagaagttgctactggtggttcaacaataatttattgcacaaca
atcaaagatgtagagcaggtattcaagtcatttacagaagcaggcattgaggcaggaatg
taccatggccaaatgaatggaaaagctcgagaggagtctcatagattatttgttagagat
gaactgcaagtcatggtggccaccattgcttttggcatgggcatagataaacctaacatt
agacaagtgattcactatggttgccctaaaagtctagaatcctactaccaggaaagtgga
cgatgtggtagagatggtatagcttctgtttgttggctttattacacaagaagtgacttt
gcaaagggcgacttttactgtggagatgtaaaatcagaaaaacaaagaaaagctgttatg
gagtcattgctcgcagctgaacgctattgtgtgctgacaacttgcagaagaaagttcttg
cttgaatactttggggaaaaaatttcagctgatagatgcgggaactgtgataattgcaaa
gtctcaaagaaggagcgagacatgtcaagggaagcatttcttctaatggcttgcattcat
tcatgcaatggcagatggggccttaatatgcctattgatgtcctgcgcgggtctcgagcc
aaaaaagttctcgaggttcagtttgataagcttccacttcatgggctggggaaaaattat
ccagcaaattggtggaaatcacttgggcatcaattgatttctcaaggttatctgaaggag
actgttagtgacgtatacagaactataagtgtcagttcaagaggagagcagtttttggcc
tcttcaagaccagattatcaacctcctttagttttgacattgactgctgaaatgcttgga
gaagaagataatggaaacacacaagacgaatttaaaactttatccacttcagaattagat
ggtttttcagaggctgagagaaagctccatcaaatgcttttggaagaaagattagagctt
gcaagaagtgttggaacagctccatatgctatctgtggagatcaaacgatcaggaaaatt
gctttgacaagaccgtctacaaaagcaagactagcaaacattaatggtgtaaatcagcac
ctagtgatgaaatatggagatcattttcttcaagttattcagaaactgtcacaaggacta
aacctatcattggacggggaagaaagggtcccaacggctagtttgcaaactaatacagta
acgaaagtgtctccactaaccaacaaatccaagaagttgacatcagcgaagtttgaagca
tggaaaatgtggcatgaagatggtctttctattcacgatattgctaacttagaagttaga
tcggctcctataaaagaacaaactgttgctgaatatctactggaagctgcccaagaagga
ttaccttttgattgggttagattcagcaagatgataggactcactcaagagatcatgtca
gaaattcagggtgctatttcaaaagttggatctacagacaagctgaagcctataaaaaat
gaattgccagaagatataagttatcagcacatcaagacttatttgtcaatgcgaaactgt
ggtatatccttggaaactaatcagtctggaagtaaccaaaccgggaaagatgacgaactt
gcacacaatgcttcaaatttgtcagactgtactttagaaacatgtcctgacaggcaatgt
gaagatgacatttctgtaaaaggtttggctgaacaaagtgacatagaaatggatgaggta
ccttctttacctgtcaacggttctgaggaacagaatatttcaaatgccagggaaggagaa
ttcacaagaaaacgacaaagggtcagtgaaacggaggaagtaaactcaactagattgaag
gctacagtgagttctgttgtagagtggatgaagaaccttgatgaaggggctacgttgagc
aatattttggaacacttcaatggatccagtgaagattctgtggttgaactgctcaattgc
ttagagtgtgactttttaatatataggaaagggaacgtgtacagggttttgtaa
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