Vigna angularis (adzuki bean): 108343689
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Entry
108343689 CDS
T04660
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108343689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108343689
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108343689
U7-dependent histone pre-mRNA processing factors
108343689
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
108343689
NCBI-ProteinID:
XP_017437509
UniProt:
A0A0L9VJ79
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All DBs
Position
8:28013635..28024122
Genome browser
AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDQFDPSLLQPLSRVASTIDAVLL
SHADTLHLGALPYAIKQLGLSAPVYSTEPVFRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGTALGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAG
RVLELILLLESYWSDENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFL
LKYVTLLINKTDLDNAPEGPKVVLASMASLEAGFSHDIFVEWANDSKNLVLFTERGQFAT
LARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQDRIKKEALKASLMKEEELKTSHGS
ENNNSDPMVIDSGNNHVPPEVAGPRGGGYRDIFIDGFVPPSTSVAPMFPCYENTSEWDDF
GEVINPDDYVIKDEDMNQIAMHGGGDINGKLDEGAAGLILDTKPSKVVSDERTVQVKCVL
VYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIDETI
DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAVVGKTENDMLSLLPVSEAAPPHKS
VLVGDLKLADIKQFLSGKGVQVEFAGGALRCGEYVTLRKVGDATQKGGGSGAQQIVIEGP
LCEDYYKIRDYLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcagtgcaggtaacgccactgtgtggagtgtacaatgagaaccctctctcg
tatttggtctccattgatggcttcaacttcctcgtcgactgtggctggaacgaccaattc
gacccctcactccttcaacccctctccagggtagcatcaaccattgatgctgtcttgctt
tcacatgctgatacacttcaccttggtgccctcccatatgccattaagcagctcggactc
tctgccccggtttattcaactgaacctgtcttcagattgggccttctcactatgtatgac
cagtacctttcaagaaagcaagtgtcggaattcgatctgttcacattggatgatattgat
tctgctttccagagtgtaacgaggctaacatattctcagaatcatcatctgtcaggcaaa
ggagaaggaattgtgattgctcctcatgttgctggacatcttttgggaggtactgtttgg
aaaattacaaaggatggtgaggatgtcatatatgctgttgattttaatcacaggaaagaa
aggcatttgaatggaactgctcttggttcttttgtgcggcctgctgttctaataactgat
gcttacaatgctttgaacaatcagccttacagacgtcaaaaggacaaagaatttggagat
atcttaaagaagactctaagagcaggtggcaatgtattactacctgttgacactgctgga
cgagtgttggaacttattctgttgttggaatcgtattggtctgatgaaaacttgaactac
cctatatactttcttacatatgttgcttccagcacaattgattacgtgaagagtttcctt
gagtggatgagtgattccatagcaaagtcttttgaaaaaactcgtgaaaatatttttctt
ctgaagtatgttacccttctgattaacaagactgaccttgacaatgctccagagggtcca
aaggtggttctagcatccatggcaagtttggaagcaggcttttctcatgatatatttgtt
gagtgggccaatgattcaaaaaatcttgtgctttttactgaaagaggccagtttgccaca
ctagctcgtatgctccaagctgatccaccaccaaaagctgtcaaagttgttgtgtccaag
cgagttcctttggttggggaagagcttattgcctacgaagaagagcaagatcgaataaaa
aaagaagctttaaaagccagtcttatgaaagaggaagaattgaaaacatctcatgggtct
gagaataataatagtgatccaatggtcattgattctggcaataatcatgtaccaccagaa
gtggctggtccacgaggtggaggataccgggatatatttattgatggatttgttccccct
tccacgagtgttgctccaatgtttccctgttatgagaatacatcagaatgggatgatttt
ggagaagtcataaatccagatgattatgtaattaaggatgaagacatgaatcagattgca
atgcacggaggtggtgatataaatggaaaacttgatgaaggtgctgcaggtttaatactt
gatacaaagccatcaaaagttgtatctgatgaaaggactgtgcaagttaagtgtgtattg
gtttacatggattttgaaggacgttcagatggaagatccatcaaaaatattctatctcat
gtggctcccttgaagctggttttggtgcatgggtcagcagaagctacagagcatctgaag
cagcactgcctgaagcatgtttgtcctcacgtttatgctccccaaattgatgagacaatt
gatgtgacctctgatttatgtgcttacaaggttcaactatctgagaagctaatgagtaat
gtactcttcaaaaagctgggagattatgaagtagcttgggtagatgctgtagtagggaag
acagaaaacgacatgctttctctgctccctgtttctgaagcggctcctccacataagtct
gttcttgttggtgatttgaaattggcagatatcaaacagtttctctctggcaagggtgtt
caggtggagtttgctggtggagctttacgttgtggtgaatacgtaactcttcggaaagtt
ggcgatgcaactcagaagggtggtggttctggtgctcagcaaattgttattgaaggtcct
ctgtgtgaagattactataaaattcgtgactatctctattcacaattttatttgctttag
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