Vigna angularis (adzuki bean): 108344792
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Entry
108344792 CDS
T04660
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108344792
09123 Folding, sorting and degradation
03018 RNA degradation
108344792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108344792
03041 Spliceosome [BR:
var03041
]
108344792
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108344792
mRNA cycle factors
Stress granule specific factors
108344792
Spliceosome [BR:
var03041
]
Complex C
Other components
Complex C specific factors
108344792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_7
TEX47
ATP-grasp_2
Motif
Other DBs
NCBI-GeneID:
108344792
NCBI-ProteinID:
XP_017438778
UniProt:
A0A0L9VMN5
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Position
8:complement(16053793..16057559)
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AA seq
604 aa
AA seq
DB search
MAAAISASMVVPATVLNGAQFGSASLYVGDLDANVIESQLFDLFSHVAQVVSIRVCRDQT
KRTSLGYAYVNFANAQDAAFAMEHLNFTLLNGKPIRIMFSHRDPSIRKSGFANVFIKNLD
ASVDNKALYDTFAAFGTVLSSKVAVDENGQSKGYGFVQFDNDESAQNAIKKLNGMLINDK
KVYVGLFVRRQERAPGNESPKFTNVYVKNFSETYTDEDLKQLFNTYGTITSAVVMRDGEG
NSRCFGFVNFESPDSAATAVEKLNGTTINNDNVLYVGRAQRKAEREAELKAKFEQEKKKK
FDKLQGANLYLKNFDDSFNDEKLKEIFSVFGTTTSCKVMVDALGRSKGCGFVAFSTPEEA
TRALDEMNGKIIGQKPLYVAVAQRKEERKANLQAQFSHMQIAAGITGYHQAYFGPGTPGF
VSPQATGYGFQPHVLPQSMRGVAPNYIMPYHLQRQGPPGQRMGPTTRRMGNTQVTLNHSL
PIPPTGPNGIHKYVVPYNLVDPSDISVSPIDVKTSASSSTTLASALASASPENQHRMLGE
HLYPLVERLTPSHQTAKVTGMLLEMDQSEVIHLIESPEDLKTKVSEAMKVLHDAAGSEVG
DQQK
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgatttctgcttctatggtggttccagccacagtgttgaatggtgcgcaa
ttcgggagtgcctctctgtatgtcggagatctcgacgccaatgtgatagagagtcagttg
tttgatctgttcagccacgtggctcaagtggtttcgattagggtttgcagggatcagact
aagcgaacctccctcggttatgcatatgtcaatttcgccaatgctcaagatgctgctttt
gccatggaacatttgaacttcactcttctgaatggaaaacccattcggattatgttttct
caccgtgatcccagcatcaggaaaagcggatttgcaaatgtgttcattaagaaccttgat
gcatcagtagataacaaggcactgtatgacacatttgctgcctttggaactgtgctatct
agtaaggtagcagttgatgagaatggtcaatcaaaagggtatggatttgtgcagtttgac
aatgacgagtctgctcagaatgctatcaaaaaattgaacggcatgttaataaatgataag
aaggtctatgttgggctttttgttcggcgtcaggaaagggctccagggaatgaatcacca
aagttcaccaatgtgtatgtgaaaaacttttctgaaacatacactgatgaagaccttaag
caactcttcaatacctatggtactataaccagtgctgtggtcatgagagacggagagggg
aactccagatgttttggttttgtgaattttgaaagtccagattcagccgctactgccgtt
gaaaagttgaatggaacaaccatcaacaatgacaatgttttatatgtagggagggctcag
aggaaggcagaaagagaggcagagttgaaagctaaatttgaacaggaaaaaaaaaaaaaa
tttgataaacttcaaggtgctaacttgtatctgaaaaactttgatgacagttttaatgat
gaaaaattgaaagagattttttctgtgtttggaacaacaacatcttgcaaggtaatggtt
gacgcacttggtcgtagcaaaggttgtggttttgttgcattctctactccggaggaagcc
actagagccttggatgaaatgaatgggaagataattggacaaaagcctctgtatgttgca
gtagcccagcgaaaggaagaaaggaaggctaatttacaggcccagttttctcatatgcaa
attgctgctggcattactggatatcatcaagcttattttggtccaggaacacctgggttt
gtctcacctcaggcaacaggctatggttttcaacctcatgtcttgccacaaagcatgcgt
ggggttgctccaaattacattatgccataccaccttcagagacagggtcctcctggacaa
aggatgggtcctactacacgaaggatgggaaatacccaggtaactctcaaccattcactt
ccaataccaccaactggtccaaatggcatacataagtatgttgtgccctataatctggtg
gatccatctgacatttctgtatctcctattgatgtcaagacttctgcttcatcatcaact
acccttgcttcagctttggcttctgctagtccggagaatcaacataggatgctgggtgaa
catttatatccactggtggaacgtcttactccaagtcatcagactgcaaaagtcacagga
atgctgctggaaatggatcaatctgaagtgattcatcttattgaatctcctgaggatttg
aagacaaaggtgtccgaggcaatgaaggtgcttcatgatgcagcaggttctgaagttggt
gatcaacaaaagtga
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