Vigna angularis (adzuki bean): 108346358
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Entry
108346358 CDS
T04660
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108346358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108346358
03009 Ribosome biogenesis [BR:
var03009
]
108346358
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108346358
Spliceosome [BR:
var03041
]
Complex A
U1 snRNP components
U1 related factors
108346358
Complex B
108346358
Ribosome biogenesis [BR:
var03009
]
Eukaryotic type
Pre-60S particles
Helicases
108346358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
108346358
NCBI-ProteinID:
XP_017440925
LinkDB
All DBs
Position
1:complement(13336960..13343578)
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AA seq
603 aa
AA seq
DB search
MNPYDNRYSDPASFHARRSDFIRSIPPPSLGGRGDVVPYGVFRSNGLGSAPVAPVPPFVP
PPGGFSVGRGSGRVGNGHVSDRKYDIGRSGGGRGGGGGGGGVHGFRGSRRGGRHDSGSSR
DDLNNITLPKQSFKNLVPFEKNFYVECPALRAMSEQEVMHYRASREITVHGHDVPKPVRM
FHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVH
VNAQPRLAHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELR
RGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQT
LLWSATWPREVETLARQFLHNPYKVIIGSPNLKANQSINQVVEVVTDMEKYHRLIRLLKE
VMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTA
TDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHGNAKFARDLI
KILQDAGQDVSPALSAMVRSAGSGQYGSGGSFRARGRGGYGNRGLTSGSNAIPLGSKRPW
QYL
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacaatagatactctgatcccgcttcttttcacgctcgtcgcagcgat
ttcattagatctattccgccgccgtctctaggcggtcgtggcgacgtggttccttatggc
gtctttaggtccaatgggttaggatccgcacccgttgctccggttccaccatttgtaccc
cctcctgggggttttagcgtaggacgaggtagtggtagagtgggcaatggtcacgtgagt
gatagaaaatacgacataggtcgtagtggcggtggaagaggtggtggcggcggtggaggc
ggggttcacggttttcggggctccaggagaggaggtagacacgatagtggatcttctagg
gacgatttgaacaatattacacttccgaagcagagttttaagaatttggtcccttttgag
aagaatttttacgttgagtgccctgcgttgagagccatgtctgagcaagaagttatgcat
taccgtgcttctagagagatcaccgtgcatgggcatgatgtgccgaaacctgtacggatg
ttccatgaggcgaattttcctgattattgccttgaggtcattgccaatctgggttttgct
gagcccactccaattcaggctcagggttggcccatggcaatgaagggtagagatttaatt
ggcatagctgagactggctcgggtaaaactttggcgtatttgcttcctgctttagtgcac
gtcaatgctcaacctcgattggcacatggtgacggtcccattgtcttagtattagcacca
acgagagagctggctattcaaattcaagaagaggctctgaaatttgggtctcgaacaaat
attagaagtacgtgcatctatggtggtgcaccaaagggcccccaaattcgcgagcttaga
agaggcgttgagattgttattgcgacacctggtcgtctaatagatatgttggaagctcag
cacacaaaccttcaaagagtgacttaccttgtcttggacgaagctgatcgaatgctggac
atgggttttgaacctcagatacggaaaattgtagaccagattcgaccagataggcaaaca
ttattatggagtgctacatggccaagggaggttgaaactctggcaaggcagtttctgcac
aatccgtacaaggtaattatcgggtcaccaaacctgaaggcaaatcaatctataaatcaa
gttgttgaagttgtaacagacatggagaaatatcatagattaatcaggctgctgaaagaa
gtgatggacgggagccggattctaatttttatggagacaaaaaagggatgtgatcaagtt
acgagacaaatgagaatggatgggtggccagcactatccatccatggtgataaaaatcag
gctgaaagggattgggtcttggctgaatttaagagtggcagaagtccaataatgactgcc
actgatgttgctgcacggggtcttgacgtgaaggacattaaatgtgtgatcaattatgac
tttccatcaagcctggaagattatgtacacagaattggtcgaactggtcgtgcaggggcc
aaaggaactgcttacacattttttacacacggcaatgccaagtttgctagggatctgatc
aagattttacaagatgctggtcaggatgtgagtcctgcattgtctgcaatggttcggtca
gctggttctggtcaatatggatcagggggaagttttcgcgcaagaggacgtggaggctat
gggaatcgaggtttgacatcaggttccaatgccattcctctaggttcgaagaggccttgg
cagtatctatag
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