Vibrio astriarenae: GT360_00640
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Entry
GT360_00640 CDS
T06574
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vas
Vibrio astriarenae
Pathway
vas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT360_00640 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vas03019
]
GT360_00640 (rhlB)
Enzymes [BR:
vas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GT360_00640 (rhlB)
Messenger RNA biogenesis [BR:
vas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GT360_00640 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QIA62149
UniProt:
A0A7Z2YCJ9
LinkDB
All DBs
Position
1:complement(125070..126383)
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AA seq
437 aa
AA seq
DB search
MKKTHITEQKFADLDLHSKVVEGLDKKGFEFCTPIQAKALPVLLTGRDIAGQAQTGTGKT
LAFLTATFNHLLNTPEHEGRKPSHPRAIIMAPTRELAIQIYNDAAPLIESTGIKAALAYG
GESYDKQLGKLEQGVDVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILE
QFTKGEVDILVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPSIEEYIEHSIPVSDYDAAALIEDLPAPLRMRTHSRSQNSQQRRTNTGGSRN
NGRKPQRRPRQRQQRDS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcagaagttcgccgatttggatttacactccaaagtt
gttgaaggtttggataaaaaagggtttgaattttgtaccccaatccaagctaaggcgttg
ccggtattgctcaccggccgtgacattgcaggccaggcccaaacgggtactggtaagacg
cttgcgttcctaactgctacttttaaccatctactaaatacacctgagcatgaaggtcgt
aagccaagccaccctcgcgctatcattatggcaccgactcgtgagctggcgatccagatt
tataacgatgctgcgccattgattgaatctactggtatcaaagctgcacttgcttacggt
ggtgagagctacgacaagcagcttgggaaactagagcaaggcgtggatgtactgattggc
acaacgggtcgtatcatcgacttctacaagcaacgtgtgtttaatctaaaccacatccaa
gctgtggtacttgatgaagctgaccgtatgtttgatcttggctttattaaagacatccga
ttcttgttccgccgtatgcctgaaccaaaagatcgcttgaacatgctgttctctgcaaca
ctgtcttaccgtgttcaagagcttgcgtttgagcacatgcacaacccagagcacgttgtc
gtcgagccagagcaaaaaaccggtcaccgtattcaagaagagctgttctacccatctaac
gaacacaagatggcgctactacaaactcttattgaagaagagtggcccgatcgtgcgatc
atttttgcgaatacgaaacacaaatgtgaatcaatttggggtcacctagcggcggatggt
catcgagtaggtcttctaactggtgatgtaccacagaagaagcgtgagaaaatccttgag
cagttcaccaaaggtgaagtagatatcctggttgccaccgatgtggctgctcgcggtcta
catattcctcaggtaacgcacgtattcaactttgaccttcctgacgactgtgaagactac
gttcaccgtattggtcgtactggccgtgctggtgcaagtggtcactcaatcagtttcgct
tgtgaagactatgctatcaaccttccttcaatcgaagagtatattgaacacagcatccct
gtttcagactatgatgctgcagcgctgatcgaggatctgccagcgccattgcgtatgcgt
actcactctcgctcgcaaaactctcaacaacgccgtacgaataccggcggctcacgcaat
aacggtcgcaaaccgcagcgtcgccctcgtcaacgtcaacaaagggattcttaa
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