Vibrio astriarenae: GT360_13140
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Entry
GT360_13140 CDS
T06574
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vas
Vibrio astriarenae
Pathway
vas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GT360_13140 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vas03021
]
GT360_13140 (rpoC)
03400 DNA repair and recombination proteins [BR:
vas03400
]
GT360_13140 (rpoC)
Enzymes [BR:
vas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GT360_13140 (rpoC)
Transcription machinery [BR:
vas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GT360_13140 (rpoC)
DNA repair and recombination proteins [BR:
vas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GT360_13140 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Tipalpha
Motif
Other DBs
NCBI-ProteinID:
QIA64379
UniProt:
A0A7Z2T4R8
LinkDB
All DBs
Position
1:complement(2820602..2824804)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLSTMDLPSEIEQMREELETTNSETKRKKITKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAGPEEAEKAYRTK
TAELHARVKVRITETVVDEDGNSTTSTQMVDTTIGRAMLWQIVPSGLPFSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYAGFAYAALSGVSVGIDDMVVPQAKYDEIESAEEE
VRDIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLKTETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALTELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDRMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVTNKDGKLVITSRASEMTIIDEFGRTKEKHKLPYGSILSKADNDAVTAGDTVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNMEDGAEVGIGDTLSRIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLIITREGGDTYEEMIPKHRQLNVFEG
EKVERGDVIADGPETPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGEQVEYANVKIANRELEADGKEPARFERDLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKKDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAEEQEGPS
AEQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgagcgcgatggtctgttctgtgcgcgt
atttttggtccagttaaagactacgaatgtctttgtggtaaatacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcatcaccagttgctcacatctggttcctaaaatcacta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaacagagccgggtatgactgatctagagaagtctcagatgctt
actgaagaagagtatctagaccgtctagaagagtggggtgatgaattcactgcgaagatg
ggtgcagaagcaattaaagatctattgagcacaatggatctgccttctgaaatcgagcag
atgcgcgaagagctagaaacaactaactctgaaactaagcgtaagaaaatcactaagcgc
ttgaagctagttgaagcgttcgttcaatcgggtaacaacccagagtggatgatcctaact
gtgcttccagttcttccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttcagatctgaacgacctataccgtcgtgtgattaaccgtaacaaccgtttgaag
cgtcttctagagctagctgctccggacattatcgtacgtaacgaaaagcgtatgctgcaa
gagtctgttgatgcacttctagataacggtcgtcgtggtcgtgcgatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aaccttctaggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcactagagctattcaaaccattc
atctacagcaagctagaaactcgtggcatggcgacgacaatcaaagctgctaagaagatg
gtagagcgtgaagaagcgatcgtttgggatatcctagacgaagttatccgcgaacaccca
gtactgcttaaccgtgcacctacacttcaccgtctaggtatccaggcgtttgaaccagta
ctaatcgaaggtaaagcgattcagctacacccactagtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggtacacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgacgcgtgacaagatcaacgtg
aaaggtgaaggcatgtaccttgctggcccagaagaggctgagaaggcataccgcactaag
accgctgaactacacgcacgcgttaaagtacgtattacagaaacagttgttgatgaagac
ggcaacagcacaactagcactcagatggttgatacaactatcggtcgtgcaatgctgtgg
caaatcgttccatcgggtctaccgttcagcctagttaaccaaaaactaggtaagaaacag
atctcgaacctattgaacgaggcttaccgtaagctaggtctgaaagacactgtcatcttc
gctgaccaaatcatgtacgctggtttcgcatacgcggcactatctggtgtatctgttggt
atcgatgacatggttgtacctcaagcgaagtacgacgaaatcgaatcagctgaagaagaa
gttcgcgatatccaagaacagtaccaatctggtcttgtaactgcgggtgagcgctacaac
aaagtgatcgatatttgggcatcgaccaacgatcgcgtagcgaaagcgatgatggacaac
ctgaaaactgaaacggttatcaaccgtgacggtgaagaagaacagcaagagtcgtttaac
agcatctacatgatggctgactcgggcgctcgtggttctgcagctcagattcgtcagcta
gcgggtatgcgtggtctgatggcacgtccagatggctcaatcatcgaaacgccaatcaca
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaactgcgaactcgggttacctaactcgtcgtcta
gtagacgtagcgcaggacgttgttgtacacgaacacgattgtggcactcacgaaggtatc
gacatgatgcctcacatcgagggtggtgatgttaaggtagccctaacagaacttgcgctt
ggtcgtgtcgttgctgaagacgtactgaaacctggtacagaagatgttctgatcccacgt
aacactctaattgatgagaagtggtgtcagatcatggaagaaaactctgtagacagaatg
aaagtacgttcggttgtaacgtgtgattctgacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgcggtcacctagtgaaccaaggtgaagcagtgggcgttatcgctgct
cagtctatcggtgagccaggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagcgaagacaacaggtaccgttaagctt
cacaacgctaagtttgtaacgaacaaagacggcaagcttgtcattacttctcgtgcttct
gaaatgactatcattgatgaattcggtcgtacgaaagagaaacacaaactgccatacggt
tctatcttgtcgaaagcagacaacgatgcagttactgctggtgatacagtggctaactgg
gaagcgcacaccatgccaatcatcactgaagtggcaggtcgcatccaattcgttgacatg
atcgacggcgtaacagtttctcgccaaacagatgacctaacaggcctatcttcaagcgaa
gtgactgacgctgcagctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgatgtaatgatccctggtactgatatgccagctcactacttc
ctacctggcaaagcgatcgtgaacatggaagacggcgcagaagtaggtatcggtgataca
ctttctcgtattccacagaagtctggcggtaacaaagatatcaccggtggtcttccacgc
gttgctgacctattcgaagctcgtaagcctaaagagcctgcgatccttgctgaacacaca
ggtactgtgtcattcggtaaagagacgaaaggtaagcgtcgtctaatcatcactcgtgag
ggtggcgatacgtacgaagagatgattcctaagcaccgtcagctaaacgtgtttgaaggt
gagaaggttgaacgtggtgatgtaattgcagatggtccagagactccgcatgacatccta
cgcctacgtggtatccacgcagtgactcagtacatcgcgaacgaagtacaagaagtttac
cgtctacaaggcgttaagattaacgataagcacattgagactatcgttcgtcaaatgctt
cgtaagtgtactatcacacacgcaggtgactctgagttcctacctggtgaacaagttgag
tacgcgaacgttaagattgctaaccgcgaacttgaagctgacggcaaagagccagcacgc
ttcgaacgtgacctactaggtatcacgaaagcgtcgctagcaactgagtcgttcatctca
gcagcatcgttccaggaaacaactcgcgttctaaccgaagctgcggtttctggtaagaaa
gatgacctacgtggtctgaaagaaaacgtaatcgttggtcgtctaattccagcgggtacc
ggtttcgcttaccaccaagaccgtcaagctaagcgtgctgaagagcaagaaggcccatca
gcagagcaagctacggataacctagcagcactactgaatgctggtttttcttcagacgag
taa
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integrated database retrieval system
