Veillonella atypica: B7L28_06855
Help
Entry
B7L28_06855 CDS
T04798
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vat
Veillonella atypica
Pathway
vat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7L28_06855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vat03400
]
B7L28_06855
Enzymes [BR:
vat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B7L28_06855
DNA repair and recombination proteins [BR:
vat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B7L28_06855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
DEAD
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_16
SecA_DEAD
RecG_dom3_C
TsaE
Motif
Other DBs
NCBI-ProteinID:
ARF99716
LinkDB
All DBs
Position
complement(1508545..1511835)
Genome browser
AA seq
1096 aa
AA seq
DB search
MDTSIDTLLSQNPSMTDGLKAFRQKGKSVIYGLSGSQKSFLLSRAIPEEQVQSIIIVVHD
KEHKELWERDLAFFWPNVQVLPFPITERVEFTTVARSLEGQGAQMRALSMLSWNRPVVVL
ATIEEATQYVVSPQYVISQSVHLEVSQSIERDELLEKLVKIGYERVDQVEQRGHFSVRGD
IFDIFPVNSDDPIRMEFFGDEIDTMRHFSVDTQRSIETVDAYTVTPFFLTSDDADSTLLS
YAKDGLIIYDEPVRIQEALKKFLKEDATHRKQHCEWSELQRSVDAKIEVAFTFMQQRSIG
LAGFYPIGIQGKTMTSFERQIPLLMDEIKQWQKLGNQVVLVINNLQRREGIEKALHGDAI
PYKLCESWDFEPDMVHVMQGLLTDGFELPHSHLVVVVEGNIYGQQKRKLRNKPKKGQEIN
YFTDLSVGDYVVHSMHGIGKYVGLKTIETEGIHRDYIEIAYAGTDRLYLPASNLDQLQKY
IGNEGDVPRIHKMGGSDWRKAVTKAQKSIDDLADKLVELYAKREITEGFAFLPDQPWQQE
FEDAFPYEETEDQLQATREIKESMERPTPMDRLLAGDVGFGKTEVAMRAIFKAVVSGKQV
AVLVPTTVLAQQHYQTFLNRFNPFGVKVDVLNRFRSTAEKKEVLKGVENGSIDILIGTHS
LLNKKVKFKDLGFLVVDEEQRFGVAQKEKWKEWANNIDVLTLSATPIPRTLHMSLVGVRE
MSVISTPPEDRLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLEQA
LPDLRYAIAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLG
LSQLYQMRGRVGRSRRRAYAYFMYRPDKMLSEAAEKRLKAIEEFTELGAGFKLAMRDLEI
RGAGNLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKEVVKEVVPDPAIDLEIDAFIDDA
YIKDSARKISVYQRMLQIKNKAQLDDLTDELIDRFGTPTDPVDRLLRVAQIKEQARLLGV
KSIVRRDGQLIIHWQDDSKMADWDMGAVREDLWKKMKFMDTKPASLYISLNGLKGSILTI
TEAVMKELSKKSKGGL
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggatacttcaattgacacactgctttcacaaaacccatctatgacagatgggctaaag
gcgtttcgccaaaaaggaaagtcagttatatatggtttaagtggatcacaaaagtcattc
ctcttaagccgtgctattccagaggaacaagtacaatctattattatcgtggtgcacgat
aaagaacataaagaattatgggaacgcgatttggcgtttttctggcctaatgtgcaggta
ttgccatttcccattacagaacgtgtagaatttactaccgtagctcgtagccttgaaggc
caaggggctcaaatgcgagcgctcagtatgttgtcctggaatcgtcctgttgtagtcctc
gctacaatagaagaggccacgcaatatgtagtgagtcctcaatatgttatatctcaaagt
gtgcatcttgaggtttctcaatctatagagcgagatgaactgttagaaaaattagttaaa
attggatatgaacgcgtagaccaggtagaacaacgtggtcatttttctgtgcgcggagat
atttttgatatcttccctgtgaatagtgatgatccaatacgtatggaattctttggcgat
gaaatcgacacgatgcgccatttctccgtagatacccaacgatctatcgaaacggtggat
gcctatacggtaacaccattcttcttaactagtgatgacgcagatagtacattgctatct
tatgcaaaggatggacttatcatttatgatgaaccggtgcgcattcaagaagcgttgaag
aaattcttaaaagaagatgcaacacatcgcaagcaacattgtgaatggtctgaattgcaa
cgctctgtagatgctaagattgaggtggctttcacattcatgcaacagcgttctataggg
ctagctggattttatccgattggcattcaaggcaaaacgatgacgagctttgagcgtcaa
attccgttgttgatggatgaaatcaagcagtggcaaaagctaggcaatcaggtggtgctt
gtgattaataatttgcagcgccgtgaaggcatagaaaaggctttgcatggtgatgctatt
ccgtataagctttgtgaaagctgggattttgagcctgatatggttcacgttatgcaaggc
ttattaactgatggctttgaattaccacatagccatttagttgtcgttgtagaaggcaat
atttacgggcagcaaaaacgcaaacttcgcaataagcctaaaaagggccaagaaattaat
tatttcacggatttatcggtcggcgattacgttgttcacagcatgcatggtatcggtaaa
tatgtgggcttaaaaacgattgaaacagaaggtatccatcgagactatattgaaattgct
tatgccggaacagataggctgtatttgcctgctagcaatttagatcaattgcaaaagtat
atcggcaatgaaggcgatgtaccacgcattcataagatgggtggtagcgattggcgtaaa
gcggttacaaaggcacagaaatccattgatgatttggcggataagctagttgaactgtat
gcgaaacgggaaattacagaaggatttgcgttcttgccggatcaaccgtggcaacaagaa
tttgaagatgcctttccttatgaggaaacagaggaccaattacaagctacgcgagaaatt
aaagaatccatggaacgaccaacaccgatggatcgcttgttagcgggggatgtgggcttt
ggtaaaacagaggtcgctatgcgtgctatctttaaggccgttgtgagcggtaagcaagtg
gccgtattggtaccaactactgtattagctcagcaacattaccaaacgtttttaaatcga
tttaatccatttggtgtaaaggtagatgtactcaatcgattccgttctacagcggagaag
aaagaggtgctaaagggcgtcgaaaatggttctatcgatatcttaatcggcacgcattcc
ttgttaaataaaaaggtaaaattcaaagatttagggttcctcgtcgtagatgaagagcaa
cgctttggtgtagcacaaaaggaaaaatggaaagaatgggctaataatatcgacgttctt
accttaagtgctacccctattccacgaacgctccatatgtctcttgtcggtgttcgtgaa
atgtctgttattagcacaccgccagaggatcgactaccagtacagacgtacgtagtagaa
tacgatatgaatctcatagctgatgcgattaaacgagaactggcgcgaggtggacaggta
tacttcgtatataaccgtgtagcatcgattaatcatatgggtgaactattagaacaggcg
ttgccagatttgcgctatgccattgcacatggacaaatgacaggccgtcaaatcgaagag
attatgaccgatttctatgagggtcattatgatgtattgctcagtacaagcatcattgaa
acaggccttgatataccaaatgccaatacgattatcatctatgatgcggatcgcttaggc
ttatcgcaactctatcaaatgcgtggccgtgtaggtcggtctagacgacgcgcctatgca
tatttcatgtatcgacctgataagatgctttcagaagcggcagaaaaacgtttgaaagcc
atcgaagaattcacagaattaggggcgggatttaaactggctatgcgcgatttggaaatt
cgtggggccggtaatctattaggttcacaacaacatggtaatatcgcatcggtcggcttt
ggcatgtatgtatctatgttagaggaagccattgcgaaagcacaaaataaagaggtcgtt
aaagaggtagtaccagatcctgctattgaccttgaaatcgatgctttcatagatgatgcc
tatatcaaggatagtgcgcgcaagatttccgtatatcaacggatgttacaaatcaagaat
aaagcgcagcttgatgatttgacggatgaacttatcgaccgttttggtacaccaacggat
ccggtagatcgtttactacgagtcgctcaaattaaggaacaggctcgtttgttgggggtt
aagagcatcgttcgtcgcgatggtcagctcatcatccattggcaagatgattcaaaaatg
gccgattgggatatgggtgctgttcgcgaggatttatggaagaaaatgaagttcatggat
acaaaaccggcgtcattatatattagtttgaatgggttgaagggatctattttaacgatt
acagaagcggtgatgaaggagttgtcaaagaaatctaaggggggcctatga
DBGET
integrated database retrieval system
