Vibrio anguillarum NB10: VANGNB10_cI0193
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Entry
VANGNB10_cI0193 CDS
T03657
Symbol
rho
Name
(GenBank) transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
vau
Vibrio anguillarum NB10
Pathway
vau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VANGNB10_cI0193 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vau03021
]
VANGNB10_cI0193 (rho)
03019 Messenger RNA biogenesis [BR:
vau03019
]
VANGNB10_cI0193 (rho)
Transcription machinery [BR:
vau03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VANGNB10_cI0193 (rho)
Messenger RNA biogenesis [BR:
vau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VANGNB10_cI0193 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
S1CSD-TOTE-2
OB_RNB
AAA
DnaB_C
DUF5662
Motif
Other DBs
NCBI-ProteinID:
CDQ49111
UniProt:
A0A191W0Y0
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All DBs
Position
1:227796..229055
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AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSDLVKLGESLGLENLARLRKQDIIFSILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDSVSGKIRPPKEGERYFALLKVNTVN
HDKPDNARNKILFENLTPLHANERMIMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIANNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKPDELQKMWILRKIVHPMSESDAMEFLIDKLAMTKTNDEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaacagaattgaagaacagacctgtgtctgatcttgtgaaacttggtgagagc
ctaggcctcgaaaacctagcgcgtctaagaaaacaagacatcatcttctccatcctaaaa
gcgcacgcaaaaagtggtgaagatatatttggtgatggggtcttggaaattcttcaagac
ggttttggtttcttacgtagcgccgactgttcatatttagctggccctgatgatatctac
gtatcaccaagccaaattcgccgtttcaacttacgcaccggtgactcagtatccggcaaa
attcgcccaccaaaagaaggcgaacgttatttcgcattgttaaaagttaacaccgttaac
cacgacaaaccggataatgcacgtaacaagattttatttgagaacttaactccactgcat
gccaatgaacgtatgatcatggagcgtggtaatggctcgacagaagacattacggcacga
gttctagaccttgcctctccgattggtaaaggccagcgtggtttgattgttgctccgcca
aaagcgggcaaaaccatgttgctacaaaatatcgcgcaaagtattgctaacaaccatcct
gattgcgtgttgatggtgctactgattgacgaacgtcctgaagaagtaacggaaatgcaa
cgccttgtgaaaggcgaagtggttgcttctacgttcgatgagccagcttctcgtcacgta
caagtggcagaaatggtgatcgaaaaagcaaaacgtttggttgagcataagaaagatgtc
gttatcctgcttgattccatcacacgtttagctcgcgcctacaacacagtgatcccgtca
tctggcaaagtattgactggtggtgtggatgccaacgcattgcaacgtcctaagcgcttt
ttcggtgcggctcgtaatgtagaagaaggcggtagtttaacgattattgcgacggcactg
gttgatactggctctaaaatggatgaagttatctacgaagagtttaaaggtacaggtaac
atggaattgcaccttaaccgtaaaattgcggaaaaacgtgtcttccctgctatcgatttc
aaccgcagcggtactcgtcgtgaagagttgcttactaaacctgatgagttacaaaaaatg
tggattctgcgtaagatcgttcacccaatgagtgaaagtgacgcaatggaattcttaatt
gataagctcgcgatgacgaaaactaatgatgagttttttgatgcgatgcgccgtcaataa
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