Vibrio anguillarum NB10: VANGNB10_cI0440
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Entry
VANGNB10_cI0440 CDS
T03657
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor (S)
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vau
Vibrio anguillarum NB10
Pathway
vau05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vau00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VANGNB10_cI0440 (rpoS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vau03021
]
VANGNB10_cI0440 (rpoS)
Transcription machinery [BR:
vau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VANGNB10_cI0440 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CDQ49355
UniProt:
Q4G3U1
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All DBs
Position
1:519328..520329
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AA seq
333 aa
AA seq
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MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQM
YLSEIGFSPLLTAQEEVLYARRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLI
EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLR
TARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
TNNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRE
RVRQIQVEGLRRLREILVKQGLNMEALFNVEYD
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcagcaatgcagtaacgaaagtcgaagagtttgaagaccaagagatcatggat
tcgattgaggttgatgaagaactcaccaccactaaaagccaaagcgatgacgatgttcaa
atcgaagatgccaaagaagggtttgatgcgtcaacaaaaagcttagatgcaacacagatg
tatcttagcgagattggtttttctccattattaacagctcaagaagaagtactttatgct
cgtcgttcactgagaggcgatgaagctgctcgtaaacgcatgatcgaaagtaacttacgt
ttggtcgttaaaatttctcgccgttatggtaatcgtggcttagctttactcgatctaatt
gaagagggtaatttaggcttgatccgtgcggtagaaaaatttgatccagaacgtggcttt
agattctcaacctatgctacttggtggatccgtcaaaccattgaacgtgcattaatgaac
caaacgcgcactatccgtttgccaattcacgtcgttaaagagttgaatatctaccttcgc
acggctcgcgagctatcgcagaagttagatcatgaacctaccgcagaagaaattgcgttc
caactggataagccagtagaagatgtcagtaaaatgctacgtctgaacgagcgtatcagt
tccgttgatacaccgattggcggcgatggtgacaaagcactactcgatatcatcccagat
acgaacaactctgatcctgaaatttctacgcaagatgatgatatccgtgaatcactactg
aattggttagatgaactgaacccaaaacaaaaagaggtacttgcacgccgttttggacta
ttaggttatgaaccgtccaccttagaagaagtcgggcgcgaaattaacttaacccgtgaa
cgagttcgtcaaattcaagtggaaggtctacgtcgtttgagagagatcttggttaaacaa
ggcttgaacatggaagcgctgtttaatgttgaatacgactaa
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