Vibrio anguillarum NB10: VANGNB10_cI0479
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Entry
VANGNB10_cI0479 CDS
T03657
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vau
Vibrio anguillarum NB10
Pathway
vau03410
Base excision repair
vau03430
Mismatch repair
vau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VANGNB10_cI0479 (recJ)
03430 Mismatch repair
VANGNB10_cI0479 (recJ)
03440 Homologous recombination
VANGNB10_cI0479 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vau03400
]
VANGNB10_cI0479 (recJ)
DNA repair and recombination proteins [BR:
vau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VANGNB10_cI0479 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VANGNB10_cI0479 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VANGNB10_cI0479 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
CDQ49394
UniProt:
A0AAW4ADE6
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All DBs
Position
1:562736..564475
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AA seq
579 aa
AA seq
DB search
MIEIKQRPAPDLSQLPDTIPTLLKRIYINRGITNLEQLDKAAKALHSYQQLGGIEQAVQL
LFHAIEQQQRIIVVGDFDADGATSCALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVD
QAIELGAQMIMTVDNGVSSIDGVRYAKQQGLTVLVTDHHLPGHELPEVDAMVNPNLANCP
FPSKALAGVGVAFYLMMALCVHMRKNGWFTRQGMSEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGHARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFG
VELLMCNDIHAARRMASELDSLNQTRKEIEEGMKQEALAFCERLQLSENSELPHGLVLFQ
RDWHQGVIGILASRIKDKYHRPVIAFADGGDGSIKGSCRSVAGLHMRDVLDRIDTQNPGL
IVKFGGHAMAAGLTIAEKEFERFAELFDQAVRRELDESALKGVILSDGELTPEEFSMHTA
ETLRSGGPWGQAFPEPLFDGEFKLLHQKLVGEKHLKLMLEPLFKGHPTNIMIDGIAFNVD
LRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgaaataaaacaaagaccagcccccgatctttcgcaactccctgacacgattcct
acactgcttaaacgtatctatatcaaccgtggtatcacgaaccttgaacaactcgacaag
gccgctaaagcactgcattcctaccaacaattaggtggtatagagcaagcggtacaacta
ctttttcacgccatcgagcagcagcagcgcatcatagtcgtcggggattttgatgctgat
ggcgcaaccagttgcgccttatctgttttggcgttgcgaatgttgggatcgcacaatgtg
gactatctcgtacctaaccgctttgaagatggttatggcttaagccctgaagtggtcgat
caagcgattgagcttggcgcgcagatgatcatgacggtcgataacggcgtctcctctatc
gacggggtgcgttatgccaagcagcaagggctgaccgtcttggtgaccgatcaccattta
ccgggacacgagttgccagaggttgatgcgatggtgaatcccaatttggctaactgcccg
tttccctcgaaggcattagctggcgtaggggtggctttctatttgatgatggcgctgtgc
gtgcatatgcgaaaaaacggctggtttactcgacaaggtatgagtgaacccaagttgatg
gagctgattgacttagtcgcactgggtactgtcgctgatgttgtgccgctcgatgaaaac
aatcgcattttagtgcatcaaggtttgcaacgcattcgcgccgggcatgcaaggccgggt
attcaagctttgattgaggtcgctaaacgtgacgcgaggcgtttagttgcctcggatttt
ggctttgcgttagggccacgcatcaatgcggcagggcgcttggatgatatgtcatttggc
gttgagctgctaatgtgcaatgacattcacgctgcgcgtcgaatggccagtgagctggat
agccttaaccaaactcgtaaagagattgaagaggggatgaagcaagaagcgctggctttt
tgtgagcgcttacaactgagtgaaaatagcgaattgccgcacggtttagtgctgtttcaa
cgcgattggcaccaaggtgtgattggtattttagcctcacgtattaaagataaatatcat
cgccctgtgattgcgtttgccgatggtggcgatggcagtatcaaagggtcatgccgctct
gttgctgggttacacatgcgcgatgtgctggatcgcattgatacacaaaaccccggttta
atcgtcaaatttggtggtcacgcgatggcggcaggtttaactattgccgaaaaagagttt
gagcgttttgctgagctgtttgatcaagccgtacgtcgcgagttagatgaaagcgcgcta
aagggcgtgattttatccgacggagagttaacacctgaagagttctcgatgcacaccgct
gaaaccttgcgttccggtggcccgtgggggcaggcgtttcctgaacctctttttgatggt
gagtttaaactactgcaccaaaaactggtgggggaaaagcatttgaagctgatgcttgaa
ccgctgttcaaaggccacccaaccaatattatgatcgatggtattgcttttaatgtcgat
ttaagacgctggccagatgcgtcggtgaaaacggtgcgtcttgcatataagcttgatatt
aatgagtttcgcggcaatcagtcactgcaattgatgattgatcacctcgaagcgaagtaa
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