Vibrio anguillarum NB10: VANGNB10_cI0950
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Entry
VANGNB10_cI0950 CDS
T03657
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vau
Vibrio anguillarum NB10
Brite
KEGG Orthology (KO) [BR:
vau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vau03016
]
VANGNB10_cI0950 (rnd)
Enzymes [BR:
vau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VANGNB10_cI0950 (rnd)
Transfer RNA biogenesis [BR:
vau03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VANGNB10_cI0950 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CDQ49864
UniProt:
A0AAW4AQB8
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All DBs
Position
1:1128512..1129630
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AA seq
372 aa
AA seq
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MNYQIITQPNDLQRVCLAARDADVVMLDTEFVRVRTFYPQLGLIQLYDGENLSLIDPLAF
DDMAPFVELLQDTSVLKVLHACGEDLEVFHNAFGCTPFPMVDTQVMAAFLGHGLSTGFAA
LVNEFLGIEIDKSESRTDWLARPLSQKQLDYAAADVFYLLPIYEKLLDKVTQAGWWQAAQ
QESELLSVKRIKQTNPDLAYLDIKGAWQLIPQELAILKPLATWRYEEAVRRDLALNFVVK
ETDLLTIARLGLTSASRMIDEGADPRSIQRHSAKIIALVKAGQQTPADQYPPKIDPLMDY
PGYKQLFKRLKDEVKSVSQTTGLATEFLASKKQLNQLLSWVWKKERDPAQLPDVMQSWRL
PILGERLNKLVE
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtgaactaccaaataattacccagcctaacgacctacaacgtgtatgccttgccgcgcga
gatgccgatgtggtgatgctcgataccgagtttgtccgagtgcgtaccttttacccacag
ctcggattgatccagctttatgatggtgaaaacctctctttaatcgacccacttgccttt
gatgacatggccccttttgtcgagttactgcaagacacctccgtgctcaaagtgctgcat
gcgtgtggtgaagatctcgaagtgtttcataatgcatttggctgcacaccgtttccaatg
gtcgatacacaagtaatggcagcctttctcggccatggactgtctaccggatttgccgca
ttggttaatgaattcttagggattgaaattgataaaagtgaatcgcgtactgattggtta
gcaaggcctttatcgcaaaagcagttggattacgctgccgccgatgtgttttatttgctg
ccgatttacgagaaattacttgataaagtgacgcaggcgggctggtggcaagcggcgcag
caagaatctgaactattgagcgtcaaacgcattaaacagactaatcccgatttggcctat
ttagatatcaaaggggcatggcaactaataccgcaagaattagcgattctcaaaccctta
gctacttggcgctacgaagaggcggtacgccgtgatttggcgctcaattttgtggtcaaa
gaaacagacttgctgactatcgctcgtttgggattgacgagtgcaagccgtatgattgat
gaaggggccgatccgagatcgattcaacgtcacagtgccaaaatcattgcattggtgaaa
gcgggccagcagactccggctgatcaatacccacctaaaatcgaccctttgatggactat
cccggctataaacagttgtttaaacggttgaaagatgaagttaaatcagtgtctcaaacc
acgggtttagcgactgaatttttagcctctaaaaaacagctcaaccagctattgagttgg
gtgtggaagaaagagagagatcccgcgcaattgccggatgtgatgcagagttggcgctta
cctattctcggtgaacggctcaacaaattggttgagtaa
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