Vibrio anguillarum NB10: VANGNB10_cI1360c
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Entry
VANGNB10_cI1360c CDS
T03657
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vau
Vibrio anguillarum NB10
Brite
KEGG Orthology (KO) [BR:
vau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vau03019
]
VANGNB10_cI1360c (hrpA)
Enzymes [BR:
vau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VANGNB10_cI1360c (hrpA)
Messenger RNA biogenesis [BR:
vau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VANGNB10_cI1360c (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
ABC_tran
AAA_23
NACHT
AAA_30
SLFN-g3_helicase
TsaE
OPA3
NTPase_1
PhoH
Zeta_toxin
LYTB
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CDQ50274
LinkDB
All DBs
Position
1:complement(1611211..1615113)
Genome browser
AA seq
1300 aa
AA seq
DB search
MNASSNSAASLRNALKECMMRDRFRLSKRISGASKIKNEQAKHAVFDQIALDIAQSMMVA
QQRLNNRVTIDYPDLLPVSQKRDDIAKAIAENQVVIVAGETGSGKTTQLPKICAELGRGK
YGLIGHTQPRRLAARSVASRIAQEMETELGGFVGYKVRFNDQISEQTQIKLMTDGILLAE
IQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSNHF
SGAPIIEVSGRTYPVDTRYRPLLGEEDADRDQLEGIFEAVDELCAEGLGDILIFMNGERE
IRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHIGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVEEGICIRLYSEEDFLSRPE
FTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAILPDTNKH
GHDSKKQLTDMGRKLARLPIDPRLARMVLEAPKLGCVKELMVIAAALSIQDPRERPSDKQ
QASDEKHRRFFDEESDFLSLVNLWNHIQTEQKALSSSQFRKQCKQDYLNYLRVREWQDVY
FQIHQSMREMDYKLNDEPGNYQNIHSAILVGLLSHIGIKDQEKNEYQGARNARFNIFPAS
GLFKKQPKWVMVAELVETSKLWGRIAAKIQPEWVEPLAQHLIKRSYSEPHWSKKQAAVMA
YEKVMLYGIPIVPKRLINYSTIDEPLCREIFIRSALVEGDWETKHAFFKQNRRLLLEVEE
LEHKSRRRDILIDDEQLFEFYDQRVATDVVSGRHFDAWWRKASKATPDLLNFEKEMLFKG
DASHITDLDYPNFWHQNGIKLKLSYQFEPGVDSDGVTVHLPLPILNQIEPTGFDWQIPGL
RHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPMELPLLDAMEKELRRMTGVEVKRE
DWKLEQVPDHLKITFRAVDHKNRKLNEHKDLYQLKESLKEKVQETLSQVADDDIEQQGLH
TWSFGELPKVYQQKRGGFEVKAYPALVDSKESVEIKLFETEQEQLNAMKAGQRRLILLNV
PSPIKYLHTNLPNKSKLGLYFNPYGKVLDLIDDCIACGIDKLIEQQGGLVWEPEQFEALK
EFVRAELGDTVVDIAQQVETILTTAFNINKKLKGKIDFTMAFALSDIKAQIEGLIFKGFA
TECGWKRLPDILRYMRAIERRMEKLPIDPNKDRLHMLKIEAVTNDYKALLNKIPRGAEVP
ENVKEIRWMIEELRVSLFAQQLGTPYPVSDKRIKNAIDAC
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagcagcaacagtgcggcatctctgcgcaatgcattgaaagaatgcatgatg
cgtgatcgttttcgtctgagtaaacgcatctctggtgcgagcaaaataaaaaatgagcaa
gccaaacatgccgtttttgatcaaattgcgctcgatattgctcagtcaatgatggtggcg
cagcagcgtctcaacaaccgcgttaccatcgactaccctgatttattgcccgtaagccaa
aaacgcgatgatatcgccaaagcgattgctgaaaaccaagtggtaattgtggcgggtgaa
acagggtcaggcaaaacgactcagttacccaaaatttgcgcagaacttgggcgcggtaaa
tatggcctgattggccatacgcaaccacgtcgccttgctgcgcgttcggtggcgagccga
atagcgcaagagatggaaacagaactgggtggctttgttggctataaagttcgttttaac
gatcaaatttctgagcagactcagatcaaattgatgactgacgggatattgttggccgaa
atccagcatgatcgttttctcaatcagtacgacaccatcattatcgatgaagcgcatgag
cgcagcttaaatatcgattttatcttaggttatttgaaagaactgctgccgcgtcgtccg
gatctcaaagtcatcattacttcggccaccatcgatcctgaacgcttctctaaccatttt
agcggtgcgcctatcattgaagtgtcgggtcgtacttatccggtcgatacgcgttatcga
ccactgcttggtgaagaggacgcagaccgcgatcaacttgaaggtatttttgaagccgtc
gatgaactctgtgctgaaggacttggcgatattctgatcttcatgaatggtgagcgagaa
attcgtgatacggccgatgcgctcagtaaacgtaacttacgtgatactgaaattgtgccg
ctttatgcacgattatccgccggtgagcagaataaaatctttcagccccatatagggcgg
cgcattgttttagccaccaacgtggcagaaacatcccttaccgttccgggtatcaaatat
gtcatcgaccctggtacggcgcgtatcagccgttatagctaccgcaccaaagtccaacgt
ttgccgattgaaccaatttctcaagcgagtgcaaatcagcgtaaaggacgttgtggccgt
gttgaagaagggatctgcatacgcctctattccgaagaggattttctttcacgcccagaa
tttaccgatccggaaatactgcgtaccaacttagcctcggttattttacaaatgaccgca
cttgggctgggtgatattgaagcattcccgtttgtggaagcgccggataaacgtaacatt
caagatggtgtgcgtttgcttgaagagcttggtgcgattcttcctgataccaataaacac
ggtcacgacagcaaaaagcagttgacggatatggggcgcaaattagcacgcttgccgatt
gatccccgtttggcgcgtatggtgctcgaagcgccaaagcttggctgcgtaaaagagctg
atggtgattgccgctgcactttcgattcaagacccacgcgaacgcccatcagataaacaa
caagcctcagatgagaaacatcgccgattttttgatgaagagtccgatttcctgagccta
gtgaatttgtggaaccacattcaaactgagcaaaaagcgttaagcagcagccaatttcgt
aagcagtgcaaacaagattacctcaattatttgcgggtacgcgaatggcaggatgtctac
ttccaaattcaccaatcgatgcgtgaaatggattacaaattgaacgacgaaccgggcaat
taccaaaatatccacagtgcaattttggttggtttactgtcgcacatcggtatcaaagac
caagagaaaaatgaataccaaggggctcgtaacgcccgctttaatatctttcccgcttct
ggtctgtttaaaaagcagcccaagtgggtgatggtcgccgaattggtggaaacctctaaa
ctgtgggggcgtattgcagctaaaatccagcctgaatgggtggaaccgctggcacagcat
ttgatcaagcgtagctacagcgaaccgcattggtcaaaaaaacaagccgccgtcatggcc
tatgaaaaagtgatgttatatggcattcctattgtgcctaaacgtttgattaactacagc
accattgacgagccactatgtcgtgagattttcattcgcagcgcattagttgaaggtgat
tgggaaaccaaacatgcgtttttcaagcaaaaccgtcgcttattacttgaagtcgaggag
cttgagcataaatctcgccgccgcgatattttgattgatgatgaacagcttttcgagttc
tacgatcagcgagtcgcaactgatgtggtctctgggcgtcattttgatgcgtggtggcga
aaagccagcaaagccaccccagatctactcaactttgaaaaagagatgctatttaaaggt
gatgctagccacatcactgatttagattatcccaacttttggcaccaaaacggtattaag
ctgaagctcagctatcaatttgaacctggcgtggatagtgacggtgtcacggtacatttg
ccattgccgatcctaaatcaaattgagccgacagggtttgattggcagatccccgggtta
cgtcatgaattggttgtcagcctcatcaagtctttgcctaaaacactgcgcaaaaacttt
gtaccagcacctaactatgcggatgcgtttttagctcgtgtcacaccgatggaattgcct
ttattggatgcgatggaaaaagagttaagacgcatgacgggcgtcgaggtgaagcgtgaa
gattggaagttagagcaagttccggatcatttaaaaatcacttttcgcgcggtggatcat
aaaaatcgcaaactcaacgagcataaagatttatatcagctgaaagagagtttgaaagag
aaagtacaagaaacactctctcaagtggcagacgatgatattgaacagcaaggtttgcat
acgtggagctttggtgaattaccgaaagtgtaccaacaaaagcgcggcggtttcgaggtt
aaagcctatccagcgttagtggatagtaaagaaagtgttgaaattaagctttttgagact
gagcaagaacaactcaatgcaatgaaagcagggcaaaggcgtctgattttgctgaacgtt
ccttcaccgattaaatatctgcacaccaatttaccgaacaagtcaaaattggggctctac
tttaacccgtatggcaaagtactggacctgattgatgactgtattgcttgtgggattgat
aagttaattgagcagcaaggcggtttagtgtgggagccggagcagtttgaggcactgaaa
gagtttgtgcgcgctgaattgggcgatactgtggtcgatatcgcccaacaagtggagacg
atccttaccactgcattcaacattaataaaaagctgaaagggaaaatcgattttacgatg
gcttttgcgttatcggatatcaaagcgcagatcgaaggtttgatctttaaaggctttgcc
accgaatgcggctggaagcgtttgccggatattctgcgttacatgcgcgcgattgaacgt
cggatggagaagttacccattgatccaaataaggatcgtttgcacatgttgaaaattgaa
gcggtaactaatgattacaaagcgctactaaacaagatacctcgtggtgcagaagtacct
gaaaatgttaaagagatccgttggatgattgaagagcttcgcgtgagtttatttgctcag
caacttggcactccttatccagtttcagataaacgtataaaaaatgcgattgatgcttgt
tag
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integrated database retrieval system
