Vibrio anguillarum NB10: VANGNB10_cII0345
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Entry
VANGNB10_cII0345 CDS
T03657
Symbol
deaD
Name
(GenBank) DNA/RNA helicase, DEAD/DEAH box type (RNA helicase). Putative phage(gi310831360)-ortholog.
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vau
Vibrio anguillarum NB10
Pathway
vau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VANGNB10_cII0345 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vau03019
]
VANGNB10_cII0345 (deaD)
03009 Ribosome biogenesis [BR:
vau03009
]
VANGNB10_cII0345 (deaD)
Enzymes [BR:
vau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VANGNB10_cII0345 (deaD)
Messenger RNA biogenesis [BR:
vau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VANGNB10_cII0345 (deaD)
Ribosome biogenesis [BR:
vau03009
]
Prokaryotic type
rRNA helicases
VANGNB10_cII0345 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
WYL
Flavi_DEAD
PTP-NADK
Motif
Other DBs
NCBI-ProteinID:
CDQ48242
UniProt:
A0AAW4AI14
LinkDB
All DBs
Position
2:422485..424503
Genome browser
AA seq
672 aa
AA seq
DB search
MQDSVIQFSELALNDSILSALNEMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKLNLSQHKPQAIVMAPTRELAIQVAAEIKNLGQKIQGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVKDLITRDRLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPGT
AQRVLFSATMPPMVKTIVDRYLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLLSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSQMEEIQLPMRDKVAEARLIKLGAELEADKGHTALDKFVELIEKLQQSLEIDATT
LAAILLKRQQGNRPLFYVGPDPMVDAIEREKSRRRDRKEGSERGERREGGRDSRDGREGR
REYGTASNDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKS
MSSDVEGKLRKLRIRQKEVGAVVCDFDDFRESRGRREGGNGGGARREGGNGGFRNREGGA
PAAGAGRGGREGGFRGNRDGAAATGRDGERRFDRNRGGDHRGNFRGERGHGNASANANAN
AGTLSRPRRAEA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgcaagactctgtaattcaatttagtgaattagccctaaacgactcaatcctttctgct
ctaaatgaaatgggtttcgtttctccaactcctatccaagctgctgctattccatttctt
cttgaaggaagagatgcgctaggtaaagcacaaacaggtacaggtaaaacggctgcgttt
tctctacctctactaaacaaattaaacctttctcaacacaagccacaagcaattgtgatg
gcaccaactcgtgagcttgctatccaagttgcggcagaaatcaaaaaccttggccaaaag
attcaaggccttaaagtacttgagatctatggcggtgcttctattgttgaccaaatgcgc
gctctgaaaaatggtgctcatattgtggttggtacacctggtcgtgtaaaagatttgatc
actcgtgatcgccttcatttagacgaatgtcataccttcgttcttgatgaagctgacgaa
atgctcaaaatgggcttcgttgatgacgtaacttggatcatggaacaagcacctggcacc
gctcaacgcgtgctgttctctgcgactatgcctcctatggtgaagacgattgttgaccgt
tacctacgtgatccagctcgtgttgacgtagcaggttcaaaccaaactgttgcgaaagta
gagcagcaatattgggttgttaaaggtgttgaaaaagatgaagcgatggctcgtcttctt
gaaacagaagaaaccgatgcgtcaatcgtctttgtacgtactcgtcaagacaccgagcgt
ttagctgattggttattatctcgtggctttaaagcggcagcgcttcatggtgatattccg
caatcactgcgtgagcgcacggttgatcatatcaaacagggtgtaatcgacattcttgtt
gcgacagacgttgttgctcgtggtcttgatgttccacgtattacacacgtgttcaactat
gatatcccattcgatgtagaatcatacatccaccgtattggccgtactggccgtgctgga
cgcaaaggtaaagcgatccttctagttcgcacgaaccaaattcgtatgttgcgtacgatt
gagcgcgtaactcgttctcaaatggaagagattcaacttccaatgcgtgacaaagttgct
gaagctcgtctcatcaaactgggtgcagagctagaagctgacaaaggtcatactgcttta
gacaaatttgttgagctcattgaaaaacttcaacaaagcctagagattgatgccacaaca
ctagcggccattttactgaagcgccaacaaggcaatcgtccactattctatgtcggccca
gatccaatggtcgacgcgatcgagcgtgaaaaatcacgtcgtcgtgatcgtaaagagggt
agtgagcgtggtgaacgtcgtgaaggcggtcgcgatagccgtgatggacgcgaaggtcgc
cgcgaatatggtactgcgagcaatgactgggatacttatcagttacaagtcggccgtgag
caaggcgtgcaagtgaaagacatcgttggtgctttagctaatgaacttggtttaaccaaa
ggttcaattggtgcaattaaacttgctcaaggccatacattcgtacagcttcctaaatca
atgtcttcagatgttgaaggcaaattgcgtaaactgcgtattcgccaaaaagaagtcggt
gctgttgtatgtgactttgatgacttccgcgagtctcgtggtcgtcgtgaaggtggtaac
ggtggtggtgcccgtcgtgaaggcggaaacggtggcttccgtaatcgtgaaggcggtgct
cctgcggctggcgcaggtcgtggtggccgtgaaggtggcttccgtggcaaccgtgacggt
gcagcggcgactggtcgtgatggtgagcgtcgttttgaccgcaaccgtggtggcgaccat
cgtggtaacttccgtggtgaacgtggtcacggcaatgctagtgctaatgctaatgccaat
gcgggtacgttaagtcgtcctcgtcgcgctgaagcataa
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