KEGG   Variovorax sp. 38R: IG196_00050
Entry
IG196_00050       CDS       T10235                                 
Symbol
tssF
Name
(GenBank) type VI secretion system baseplate subunit TssF
  KO
K11896  type VI secretion system protein ImpG
Organism
vav  Variovorax sp. 38R
Brite
KEGG Orthology (KO) [BR:vav00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vav02044]
    IG196_00050 (tssF)
Secretion system [BR:vav02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   IG196_00050 (tssF)
SSDB
Motif
Pfam: T6SS_TssF
Other DBs
NCBI-ProteinID: QOF78840
LinkDB
Position
10489..12360
AA seq 623 aa
MDAKLLDYYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARI
QLKMDAEFPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTLLRGRM
IKGEQTACEFRTGHAVTLWPIKIADASLGPVPAEVAHALPMAARQAKSAITIKLEAVGGA
RFAEMPLDRLEFFLSGAELHALRVLELVAHHSVATVCRAGPGSTARIVPLGDEAIRHEGF
DPEQSLLPYDARSFQGYRLLHEYFAFPERYLFFSVKHLRAAASAIGGTTMEVVILLDRAD
ADLERLVDAKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFTVERVT
GHMANGSEEREFRPFLGSFASDDGDFGAYFSLRREPRLVSDRARAQGTRTSYTGSEVYVS
LVDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRVSAPVRGVRILRGPSRPY
PALAEGALTWRLISHLGLNYLSLTDVDATQGAAALREMLDLYGNLADPAVRRQIQGVRSM
ALAPVFRRLPEPGPIVFGRGVEIALQIDEVAFSGASPYLFGAVLEQFFSRHVSLNAFTEF
ALSSLQRGEIARWTPRVGRRPAV
NT seq 1872 nt   +upstreamnt  +downstreamnt
atggacgccaagctcctcgactactacaaccgcgagctcacctacatgcacgagctcggg
gccgagttcgcgcagcgctacccgaagatcgcgggccgcctgggcatgcgcggcatcgag
gtcagcgacccgtacgtggagcgcctgctcgaaggcttcagctttctcacggcgcgcatc
cagctcaagatggacgcggagtttccacgcttctcgcagcgcctgctcgaagtggtgtac
cccaacttcctcgcgccgctgcccgcgatggccgtggtgcagatcgacggcaacctcaac
gaaggctcgctgaaggcgggttacgagctgccgcgccacacgctgctgcgcggtcgcatg
atcaagggcgagcagacggcctgcgagttccgcacgggccacgccgtcacgctgtggccg
atcaagatcgcggatgccagcctcggcccggtgccggccgaggtcgcgcatgcattgccg
atggcggcgcgccaggccaagagcgccatcacgatcaagctcgaggccgtgggcggcgcg
cgctttgccgagatgccgctcgaccggctcgagttctttctctcgggcgcggagctgcat
gcgctgcgcgtgctcgagctggtcgcccaccacagcgtggccaccgtgtgccgcgccggc
cccggcagcacggcgcgcatcgtgccgctgggcgacgaggcgatccgccacgagggcttc
gaccccgagcagtcgctgctgccctacgacgcgcgctcgttccagggctaccgcctgctg
cacgagtacttcgcctttcccgagcgctacctgttcttcagcgtgaagcatttgcgcgcg
gcggcctcggccatcggcggcaccacgatggaggtcgtgatcctgctcgaccgcgccgac
gccgacctggagcggctggtcgacgccaagcacttctcgctgttctgcacgcccatcatc
aacctcgtgccgcgccgcagcgaccgcatcccggtcgggccgggccagcacgagcaccat
gcggtgatcgaccgcacgcgcccgcgcgacttcgagatcttcaccgtcgagcgcgtcacg
ggccacatggccaacggctcggaagagcgcgagttccgccccttcctcggctcgttcgcc
tccgacgacggcgacttcggcgcctacttctcgctgcgccgcgagccgcgcctcgtgtct
gaccgcgcgcgtgcgcaaggcacgcgcaccagctacaccggcagcgaggtgtacgtgtcg
ctggtcgaccagcacgacgcgccgttcccgcacagcctgcgccacatcaccctcgacgcg
ctgtgcaccaaccgcgacctgccgctgctgctgccgacggggttggagtcggacttcacg
ctgcgcgtgtcggcgccggtgcgcggcgtgcgcatcctgcgcggcccgtcgcggccgtac
ccggcgctggctgaaggtgcgctcacgtggcgcctcatcagccacctgggtctcaactac
ctgagcctgaccgacgtcgatgccacgcagggcgccgctgccctgcgcgagatgctcgac
ctgtacggcaacctcgccgaccccgcggtgcgccggcagatccagggcgtgcgctcgatg
gcgctggcgccggtgttccgtcgcctgcccgagccgggcccgatcgtgttcgggcgcggc
gtcgagattgcgctgcagatcgacgaggtcgcgttctcgggcgcgagcccgtacctgttc
ggtgccgtgctggagcagttcttcagccggcacgtgtcgctcaacgcgttcaccgagttc
gcgctgtccagcctgcagcgcggcgagattgcgcgctggaccccgcgcgtgggacgccgc
cccgccgtatga

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