KEGG   Variovorax sp. 38R: IG196_00125
Entry
IG196_00125       CDS       T10235                                 
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
vav  Variovorax sp. 38R
Pathway
vav03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vav00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    IG196_00125 (tssM)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vav02044]
    IG196_00125 (tssM)
Secretion system [BR:vav02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   IG196_00125 (tssM)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical Herpes_pp85
Other DBs
NCBI-ProteinID: QOF78855
UniProt: A0A7L8SHA4
LinkDB
Position
30604..34239
AA seq 1211 aa
MLRALFRFLVSRDLWVLFGLIALAFLIWVIGPVIAVGRYRPLESEFVRIVVIALMFGVWL
LRVAYRKWRERRLNAQLLHQLRTPSPKAKEAKPEEAPEIKELHSGFSDATAVLKNMRFGP
GPGGKAAGRFALFDRQYLYQLPWYIFIGAPGSGKTTALVNSDLDFPLADQLGKAAVRGIG
GTRNCDWWFTNEAVLIDTAGRYTTHESHRETDEGEWKGFIELLKKFRPRQPINGAILTIS
IADLPLADDAQRARHAMALRKRLLELRNDLGINFPVYVLVTKTDLLAGFNEYFGSLGRAE
RQQVWGFTFPIEGNPADPAKADLRERFHQEYKLLHQRLDERLPELMATEPDPMRRAQAYL
LPQQFASFEDILGTFLADVFNPSKFEVAPLLRGVYFTSGTQEGTAFDRVMGAIKRYLQVN
APPAPPPGPGKSYFLKELLQQVIFRDAGVAGTNLRWYRRRRAIDLAGYALVGVLAVVLLG
AWANSWRHNKAYVAEVDGNAKAFNKAAARGELPTVVDSSGDVASSLLILDRLRDLPKSTE
FDIGDPPVGYRFGLYQGEKLQAATDGVYQRALETVLLPQAAQRVEQSLREAAKADAEYSY
EALKAYLMLYDPERYDADFLQAWLLTDVDRKIGASLTREQRTNLEAHLKTLFADRVVTSP
FTKDDKLIAQTRERLAGVPLAQRSYARLRRILLQTSAPNAFTIAEAGGAESALVVRRASG
KPLTDGIPTLFTYRGYWDIFDKRMAETTLALEQEDRWVLQIRAPGMADITSRELLLREVR
RLYLTDYIRTWDEYLADIRLAESKSLLQSIQMTRVLSTGESPMSRIIRGAARETDLLRNH
DEATRSLLDQAQNRVTSTRERIEQLIGQPDGSQRRNTAPDRPESLVDNHFAPLRRMVTAP
KAGGQTPLDQTAALINELYTFLTATDTALRSGNIPPSSDAVTKLQAEAGRLPVPFQGMLN
DLSATASSKAAAVTRQNIGQNAAATIGQFCSQAIAGRYPFARGSNRDVAAGDFAQLFAPG
GMMDDFFQKNLASQVDTSVNPWTFKRGVDGSASGRSAYLDAFQKAQAIRDVFFSGMAGGR
TPSFTLDIRPEDMDATLTQFTLDIDGQTVRYAHGPQAPSSIKWPGPRNSNQVRLQVTVAN
GTPAGGIVTEGPWALHRLFDKASISSGRTPESFNATFDLQGKKVVLAVTANSVYNPLRLS
QMNSFSCPGKS
NT seq 3636 nt   +upstreamnt  +downstreamnt
atgctgcgcgcgctcttccgttttctcgtcagccgcgacctctgggtcctgttcgggctg
atcgcactcgcgttcctgatctgggtcatcggcccggtgatcgccgtgggccgctaccga
ccgctcgaaagcgagttcgtgcgcatcgtggtcatcgcgctgatgttcggcgtgtggctg
ctgcgcgtggcgtatcgcaagtggcgcgagcgccgcctcaacgcgcagctgctgcaccag
ctgcgcacgccgtcgcccaaggcgaaggaggccaagcccgaagaggcgcccgagatcaag
gaactgcacagcggtttctccgacgccacggcggtgctgaagaacatgcgtttcggcccg
ggccccggcggcaaggcggccgggcgcttcgcgctgttcgaccggcagtacctttaccag
ctgccctggtacatcttcatcggcgcaccgggctcgggcaagacgacggcgctggtcaac
tccgacctcgactttccgctcgccgaccagctcggcaaggcggccgtgcgcggcatcggt
ggcacgcgcaactgcgactggtggttcaccaacgaggccgtgctcatcgacacggccggg
cgctacaccacgcacgagagccaccgcgagaccgacgagggcgagtggaagggcttcatc
gagctgctcaagaagttccggccgcgccagccgatcaacggcgcgatcctcaccatcagc
atcgccgacctgccgctggccgacgacgcgcagcgcgcacgccacgcgatggcgctgcgc
aagcggctgctcgagctgcgcaacgacctgggcatcaacttcccggtgtacgtgctggtc
accaagaccgacctgctggccggcttcaacgagtacttcggttcgctgggccgcgccgag
cgccagcaggtgtggggcttcaccttccccatcgagggcaaccccgccgacccggccaag
gccgacctgcgcgagcgctttcaccaggaatacaagctgctgcaccagcgcctggacgaa
cgcctgcccgaactgatggcgaccgagcccgacccgatgcggcgtgcgcaggcctacctg
ctgccgcagcagttcgcgagcttcgaggacatcctgggcaccttcctggccgacgtgttc
aacccgtcgaagttcgaggtggcgccgctgctgcgcggcgtgtacttcaccagcggcacg
caggagggcacggccttcgaccgcgtgatgggcgccatcaagcgctacctgcaggtgaac
gcgccgcccgcgccgccgccgggcccgggcaagagctacttcctgaaagaactgctgcag
caggtgatcttccgcgacgcgggcgtggccggcaccaacctgcgctggtaccgccgccgc
cgcgcgatcgacctcgcgggctacgcgctggtcggcgtgctcgcggtggtgctgctgggc
gcgtgggcgaacagctggcgccacaacaaggcctacgtggccgaggtcgacggcaacgcc
aaggccttcaacaaggcggcggcgcgcggcgagctgccgacggtggtcgattcgagcggc
gacgtcgcgagctcgctgctcatcctcgaccgcctgcgcgacctgcccaagtccaccgag
ttcgacatcggcgatccgcccgtgggctaccgcttcgggctctaccagggcgagaagctg
caggccgccaccgacggcgtgtaccagcgcgcgttggaaacggtgctgctgccgcaggcc
gcgcaacgtgtcgagcagtcgctgcgcgaggccgcgaaggccgatgccgaatacagctac
gaggcgctcaaggcgtatctcatgctgtacgaccccgagcgctacgacgccgactttctg
caggcctggctgctgaccgatgtcgatcgcaaaatcggcgcctcgctcacgcgcgagcag
cgcaccaacctcgaggcgcatttgaagacgctgttcgccgaccgcgtcgtgacctcgccc
ttcaccaaggacgacaagctcatcgcgcagacgcgcgagcgcctggccggcgtgccgctc
gcgcagcgctcgtacgcgcggctgcgccgcatcctcctgcagaccagcgcgcccaatgcc
ttcaccattgccgaggcgggcggtgcggagtcggcgctggtggtgcggcgcgccagcggc
aagccgctgaccgacggcatcccgacgctcttcacctaccgcggctactgggacatcttc
gacaagcgcatggccgagaccacgctggcgctggagcaggaagaccgctgggtgctgcag
atccgcgcaccgggcatggccgacatcacctcgcgcgagctgctgctgcgcgaggtgcgg
cgcctgtacctcaccgactacatccgcacctgggacgagtacctggccgacatccggctg
gccgaaagcaagtcgctgctgcagagcatccagatgacgcgcgtgctgtcgacgggcgag
tcgccgatgtcgcgcatcatccgcggcgcggcgcgcgagaccgacctgctgcgcaaccac
gacgaggccacgcgcagcctgctcgaccaggcacagaaccgcgtgacgagcacgcgcgag
cgcatcgagcagctcatcggccagcccgacggcagccagcgccgcaacaccgcgcccgac
cggcccgagtcgctggtcgacaaccactttgcgccgctgcgccgcatggtgactgcgccc
aaggccggcggccagacgccgctggaccagacggcggcgctcatcaacgagctctacacc
tttctcaccgccaccgacaccgcgctgcgcagcggcaacatcccgccctcgagcgatgcg
gtgaccaagctgcaggccgaagccgggcgtttgccggtgccgttccagggcatgctgaac
gacctgtcggccacggcgtcgtcgaaggccgcggcggtgacgcggcagaacatcgggcag
aacgccgccgcgaccatcgggcagttctgcagccaggcgatcgcggggcgctacccgttc
gcgcgcggctcgaaccgcgacgtggcggccggcgacttcgcgcaactcttcgcgcccggc
gggatgatggacgacttcttccagaagaacctggcctcgcaggtcgacacctcggtcaac
ccctggaccttcaagcgcggcgtggacggcagcgcgtcggggcgttcggcgtacctcgat
gcgttccagaaggcgcaggcgatccgcgacgtgttcttctcgggcatggcgggcgggcgc
acgccgtcgtttacgctcgacatccggcccgaggacatggacgccacgctcacgcagttc
acgctcgacatcgacggccagacggtgcgctatgcccacggcccgcaggcgcccagcagc
atcaagtggcccggtccgcgcaacagcaaccaggtgaggctgcaggtgaccgtggccaac
ggcacgccggccggcggcatcgtgaccgaagggccgtgggcgctgcaccggctgttcgac
aaggcttcgatctcgtcgggccgcacgcccgaatcgttcaatgcgaccttcgacctgcaa
ggcaagaaggtggtgctcgcggtgacggccaacagcgtctacaacccgctgcggttgtcg
cagatgaacagcttctcgtgcccggggaaatcctag

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