Variovorax sp. 38R: IG196_00905
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Entry
IG196_00905 CDS
T10235
Name
(GenBank) substrate-binding domain-containing protein
KO
K10439
ribose transport system substrate-binding protein
Organism
vav Variovorax sp. 38R
Pathway
vav02010
ABC transporters
vav02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
IG196_00905
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
IG196_00905
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vav02000
]
IG196_00905
Transporters [BR:
vav02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
Ribose transporter
IG196_00905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Toprim_2
Toprim_3
TAT_signal
Motif
Other DBs
NCBI-ProteinID:
QOF79002
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All DBs
Position
complement(200313..201359)
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AA seq
348 aa
AA seq
DB search
MRRNFLKSAAAAGIGLAGASAFAQQQAAAPAAGAGLRGNASDVYVMNVMVSGVEYWFPVY
EMMKQLGRTLGVRTRYTGTPEYDVNKQLASFEQELARKPAGILLHPMNPDPFIEPINRAA
AMGIPVVTFAADSPNSKRTSFITSDNDREGNQAADAIAASLNGKGEYAVLENPGQDNHDR
RISAFVNRMKAKHPGMKLVGRAASNQDPNKAYQAVLSLAQANPNLGALFMPEANSALGAA
QAKVETKKNIKVMCCDVNAKILDMIKSGDVFGAINPNQGMQGYMGMMMLFLAKNPGLIDP
MNDAKRNGTNPMAVPFLDNGLAVVSKANADDFYWDKYLARRGTKGIGE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtaatttcctgaagtccgcggccgctgccggtatcggcctggccggtgcgagc
gcgttcgcgcaacagcaagccgcagcccctgcggcaggtgccggcctgcgcggcaatgcc
agcgacgtctacgtgatgaacgtgatggtctcgggcgtcgagtactggttcccggtctac
gaaatgatgaagcagctcggccgcacgctgggcgttcgcacccgctacaccggcacgccg
gagtacgacgtgaacaagcagctcgcatcgttcgaacaggaactggcgcgcaagcccgcc
ggcatcctgctgcacccgatgaaccccgatccgttcatcgaacccatcaaccgcgccgcc
gcgatgggcatcccggtcgtgaccttcgcggccgactcgccgaactccaagcgcacctcg
ttcatcacgtccgacaacgaccgcgaaggcaaccaggccgccgacgccatcgccgcttcg
ctgaacggcaagggcgagtacgccgtgctcgagaacccgggccaggacaaccacgaccgc
cgcatctccgcgttcgtgaaccgcatgaaggccaagcacccgggcatgaagctggtcggc
cgcgccgccagcaaccaggacccgaacaaggcctaccaggccgtgctgagcctggcgcag
gccaacccgaacctgggcgcgctgttcatgcccgaagccaactcggcgctcggcgctgcg
caggccaaggtcgagaccaagaagaacatcaaggtgatgtgctgcgacgtcaacgccaag
atcctggacatgatcaagtcgggcgacgtgttcggtgccatcaacccgaaccagggcatg
cagggctacatgggcatgatgatgctgttcctggccaagaacccgggcctcatcgatccg
atgaacgacgccaagcgcaacggcaccaacccgatggccgtgcccttcctggacaacggc
ctggccgtggtcagcaaggccaacgccgacgacttctactgggacaagtacctcgcccgc
cgtggcaccaagggaatcggcgagtga
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