KEGG   Variovorax sp. 38R: IG196_01620
Entry
IG196_01620       CDS       T10235                                 
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
vav  Variovorax sp. 38R
Pathway
vav03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vav00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    IG196_01620 (tssM)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vav02044]
    IG196_01620 (tssM)
Secretion system [BR:vav02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   IG196_01620 (tssM)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical Tetrabrachion
Other DBs
NCBI-ProteinID: QOF79136
LinkDB
Position
371775..375380
AA seq 1201 aa
MIKKIFGFLFSPLLLTLLALIVVALLIWWIGPLVKIGSLAPLEGEMTRAIVIGVIVLIVV
LRALYRRWRARRASQHLTDGLMKAPAAAKTGAPVDGEQKILDTRFSEAVATLKQMRLHAA
GKKPGWRDWLSISGGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVG
GTRNCDWWFTDEAVLIDTAGRYTTQDSHQSEDKSAWEGFLGLLKKARPRRPLNGVFLTVS
VGDLLSQGPEARTQLAASIRARLLELDSKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQ
RAQVFGFTLPADENVQLEEKGLSAAFHREFGLLHNRINDGLIARMQRETDGTRRAAIFGF
PAQFGSVGPLLSDLLEQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGSLARSFGIER
AMLAPQKSSGRSYFLTALLREVVFPEQRLAGADVKLERRRNTLRLAGVAAMTLVTVGLLA
AWGYSTWQNHNYLKSVEARVEPAQKTLAALPTRVQNLVEVAPVLQGLRDIWKTPDNRQGD
EPLSMTLGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLRTAQKDNLEFTYEALKS
YLMLYQPERFDPEALKAWITLDWARNLDRGIPEDQRKALEDQLDVLIAQGPPRSPLKMDE
NLVRSVRAVLASYPLEQRVFSRLKRQRATKDIPGFSVAQATGPSGPLVFERISGKPLSEG
VPGMFTYDGYHKRFQNEVVVLTGLLAAEDPWVLGQDRNASERLRDVAALGALTDRVRRLY
LEEYVKQWEALLADVRLIRVSGLEKNIETARILSGVDSPLANFLRAVVKQTTLIPAADAN
KDVVSKATETVRNTRKGLEDLFGSDPGKQVAPGKRIESIVDDRFESLRRLVTAGGPNQPA
PIDDALKLFNEVYVYLNAVDTAVKGRTSPPPGDVAGKLKSDAGRLPEPVRSMIENLSQTG
ATQAQVAERGNLSQDLRPVTEFCTRAIAGRYPFVQSSKRDVLPEDFGQMFGAGGLMDDFF
QKRLAALVDTSTRPWRYKPVAERGAVTTQALAQFERAARIKDIFFRGGGRGPSMRLDFKP
VEMDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQVRVQVSPPSTTGSSGSAMD
GPWALFRTLDDGQLEAGDAPEKFFITFQVGARKTRFEVTTNSVQHPIRLKELREFSCPEG
L
NT seq 3606 nt   +upstreamnt  +downstreamnt
atgatcaagaaaatcttcgggttcctgttcagcccgctgctgctgacgctgctggcgctg
atcgtcgtcgcactgctgatctggtggatcggcccgctggtgaagatcggttcgctcgcg
ccgctcgaaggcgagatgacgcgcgccatcgtcatcggcgtcatcgtgctcatcgtcgtg
ctgcgcgcgctgtaccgccgctggcgtgcgcgccgtgccagtcagcacctgaccgacggc
ttgatgaaggcgccggccgccgccaagaccggtgcaccggtcgacggcgaacagaagatc
ctcgacacgcgcttcagcgaagccgtcgccacgctcaaacagatgcgtctgcacgccgcc
ggcaagaagccgggctggcgcgactggctgtcgatctcgggcggcagctatctgtacgac
ctgccgtggtacgtcttcatcggcgcaccgggggcgggcaagaccacggcgctcgtcaac
tcgggcctgagctttccactggccgagaagttcggccccggcgccatccgcggcgtgggc
ggcacgcgcaactgcgactggtggttcaccgacgaggccgtgctcatcgacacggccggc
cgctacaccacgcaggacagccaccagtcggaagacaagagcgcgtgggaaggcttcctc
ggcctgctgaagaaggcgcgcccgcgccgtccgctcaacggcgtgttcctcaccgtgagc
gtgggcgacctgctgagccagggccccgaggcgcgcacgcaactcgcggcgtcgatccgc
gcgcggctgctcgaactcgacagcaagctcaccacgcgcctgccggtgtacgtgctcgtg
acgaagagcgacctgctctacggcttcaccgactacttcgacgacctcggcaaggaacag
cgcgcgcaggtcttcggcttcacgctgccggcggacgagaacgtgcagcttgaagagaag
ggtctgtccgctgcgttccaccgcgagttcggcctgctgcacaaccgcatcaacgacggc
ctcatcgcacgcatgcagcgcgagaccgacggcacgcgccgcgcggcgatcttcggcttt
ccggcgcagttcggttcggtcggcccgctgctttctgatctgctcgaacaggtgttcacc
ggctcgcgctttgcgcagccgccgtgggtgcgcggcgtgtacttcaccagcggcacgcaa
gagggcagcccgatcgaccgcgtgatgggcagcctggcgcgcagcttcggcatcgagcgc
gccatgctcgcgccgcagaagtcgagcgggcgcagctacttcctcaccgcgctgctgcgc
gaggtcgtgttccccgagcagcgcctcgcgggcgccgacgtgaagctggagcgccgccgc
aacacgctgcgcctggcgggcgtggccgcgatgacgctggtcaccgtgggtctgctcgcg
gcctggggctacagcacctggcagaaccacaactacctgaagtcggtcgaggcgcgcgtc
gagcccgcgcagaaaaccctggccgcgctgccgacgcgcgtgcagaacctggtcgaggtc
gcgcccgtgctgcagggcctgcgcgacatctggaagacgcccgacaaccgccagggcgac
gagccgctgtcgatgacgctgggcctgtaccagggcgacaagctcgacgccgccgccatg
ctcacgcaccagcgcgcgctcaacgacgccttcctgccgcagatcgccaagcgcatcgag
gaccagctgcgcaccgcgcagaaggacaacctcgagttcacttacgaggccctgaagagc
tatctgatgctctaccagcccgagcgcttcgaccccgaggcgctgaaggcctggatcacg
ctcgactgggcgcgcaacctcgaccgcggcattcccgaggaccagcgcaaggcgctcgaa
gaccagctcgacgtgctcatcgcccagggcccgccacgctcgccgctgaagatggacgag
aacctggtgcgcagcgtgcgcgccgtgctcgcgagctacccgctggagcagcgcgtattc
agccgcttgaagcgccagcgcgccaccaaggacattccgggcttcagcgtggcgcaggcc
accggcccgtcgggcccgctcgtgttcgagcgcatcagcggcaagccgctgagcgagggc
gtgccgggcatgttcacttatgacgggtatcacaagcgcttccagaacgaggtcgtggtg
ctcaccggtctgctggccgccgaagacccgtgggtgctggggcaagaccgcaatgccagc
gaacgcctgcgcgatgttgccgcgcttggtgcgctcaccgaccgcgtgcgtcgcctctac
ctcgaggagtacgtcaagcagtgggaagcactcttagccgatgtgcggttgatccgcgtc
agcggcctggagaagaacatcgagaccgcgcgcatcctgtcgggcgtcgattcgccgctc
gcgaacttcctgcgtgcggtggtcaagcagaccacgctgattcccgcggccgatgccaac
aaggacgtcgtgagcaaggccaccgagaccgtgcgcaacacgcgcaagggtttggaagat
ctgttcggcagcgaccccggcaagcaggtggcgccgggcaagcgcatcgagagcatcgtg
gacgatcgctttgaatcgctgcgccgccttgtcaccgcgggcggaccgaaccagccggcg
ccgatcgacgatgcgctcaagctcttcaacgaggtgtacgtgtacctcaacgccgtcgac
acggccgtgaagggccgcacctcgccgccgcccggtgacgtggccggcaagctcaagtcg
gacgcgggccgtctgcccgagccggtgcgcagcatgatcgagaacctgagccagaccggc
gcgacccaggcgcaggtggccgagcgcggcaacctgagccaggacctgcgccccgtcacc
gagttctgcacccgcgccatcgcgggccgctatccgttcgtgcaaagcagcaagcgcgac
gtgctgcccgaagacttcggccagatgttcggcgccggcggcctcatggacgacttcttc
cagaagcgcctggccgcgctggtcgacaccagcacccggccgtggcgctacaagcccgtg
gccgagcgtggcgccgtcaccacgcaggcactggcgcagttcgagcgcgcggcgcgcatc
aaggacatcttcttccgtggcggtgggcgcgggccgtcgatgcggctggacttcaagccg
gtggagatggatgcgggcatcacgcagttcatcctcgacgtggacgggcagctcgtgaag
tacgcgcatgggccggtggtgccgatggcggtgcagtggccggggccgaagggcagcaac
caggtgcgcgttcaagtcagcccgccgtcgaccaccgggagttcggggtcggcgatggat
gggccttgggctttgttccgcacgctggacgatgggcagctggaagctggggatgcgccg
gagaagttttttatcaccttccaggtgggggcgcggaagacgcggttcgaggtgacgacg
aacagcgtgcagcatccgattcggttgaaggagttgcgggagttttcttgtccggagggg
ttgtga

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