Variovorax sp. 38R: IG196_04825
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Entry
IG196_04825 CDS
T10235
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vav Variovorax sp. 38R
Pathway
vav03410
Base excision repair
vav03430
Mismatch repair
vav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IG196_04825 (recJ)
03430 Mismatch repair
IG196_04825 (recJ)
03440 Homologous recombination
IG196_04825 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vav03400
]
IG196_04825 (recJ)
DNA repair and recombination proteins [BR:
vav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IG196_04825 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IG196_04825 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IG196_04825 (recJ)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QOF79723
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Position
complement(1085472..1087193)
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AA seq
573 aa
AA seq
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MKIIARDIPPRTVWALEQAGVHPLLARLFAARGVRGKDELDDGLARLLLPDTLRGTREAA
MLLADAIAQDKRLCIVADYDCDGATACAVGVRGLRLLGAKHVSYLVPDRVVDGYGLTPPI
AERVANAGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPLADVMVNPNQPG
CEFESKSIAGVGVMFYVLLALRSELRTRGVFDTATQPKLDALLPLVALGTVADVVKLDAN
NRRLVAQGLRRIRAGAMPAGVAALFKAAGRTASAATTFDFGFALGPRINAAGRLADMTLG
IECLLTDDAGRADELARMLDGINRERRDIEGGMRDQALLLAESLFAADGEGVDAPPPAIS
VFGADFHEGVVGIVASRIKDRFHRPTFVFAASAAPGKEQELKGSGRSIPGFHLRDALDLV
AKRHPGVLLRFGGHAMAAGCTVAREHFPVFERALAQVAGEWLAEAALTRQIETDGPIARE
YMRIDLVDTLHREVWGQGFAPPTFSEEVEVVSQRLVGEKHLALKLKHQGQPIDAIWFSHT
EPLPPRVKLAFRLDADEWQGVRRLRFLVEGAEV
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaatcatcgctcgagacatccccccgcgcaccgtctgggcgctggaacaagccggc
gtgcatccgctgctggcgcgcctctttgccgcacgcggtgtgcgcggcaaggacgagctc
gacgacggcctcgcgcgcctgctgctgcccgacacgctgcgcggcacgcgcgaagccgcc
atgctgctggccgacgccatcgcacaggacaagcgcctgtgcatcgtcgccgactacgac
tgcgacggcgccaccgcctgcgcggtcggcgtgcgcggcctgcgcctgctgggcgccaag
cacgtgagctacctcgtgcccgaccgcgtggtcgacggctacggcctgacgccgccgatt
gccgagcgcgtggccaacgccggcgccgacatgctgatcaccgtcgacaacggcatcgcc
agcgtcgagggcgtggccgctgccaaggcgcgcggcctgcaggtgctggtgaccgaccac
cacctgcccggccccgaactgccgctggccgacgtgatggtcaaccccaaccagcccggc
tgcgagttcgaaagcaagagcatcgccggtgtcggcgtgatgttctacgtgctgctcgcg
ctgcgctccgaactgcgcacgcgcggcgtgttcgacaccgccacgcagcccaagctcgat
gcgctgctgccgctggtcgcgctcggcaccgtggccgacgtggtgaagctcgacgccaac
aaccgccgcctcgtggcgcagggcctgcgccgcatccgcgcgggcgcgatgccggccggc
gtggcggcgctgttcaaggccgcgggccgcaccgcctcggccgcgaccaccttcgatttc
ggctttgccctcggcccgcgtatcaacgcggccggccggctggccgacatgacgctgggc
atcgaatgcctgctgaccgacgacgcgggccgtgccgacgaactcgcgcgcatgctcgac
ggcatcaaccgcgagcggcgcgacatcgaaggcggcatgcgcgaccaggcgctgctgctg
gccgagtcgctgttcgcggccgacggcgaaggcgtcgacgcaccaccgccggccatcagc
gtgttcggcgccgacttccacgaaggcgtggtgggcatcgtcgcctcgcgcatcaaggac
cgttttcatcgcccgaccttcgtgttcgcggccagcgcggcgcccggcaaggagcaggag
ctgaagggctcgggccgctcgattccgggctttcacctgcgcgacgcgctcgacctcgtg
gccaagcgccacccaggcgtgttgctgcgcttcggcggccacgcgatggccgcgggctgc
accgtggcgcgcgagcactttccggtcttcgaacgcgcgctggcgcaggtcgcgggcgaa
tggctggccgaagccgcgctcacgcgccagatcgagaccgacggaccgatcgcccgcgag
tacatgcgcatcgacctcgtcgacacgctgcaccgcgaggtctggggccagggcttcgcg
ccgcccaccttcagcgaggaggtcgaggtggtgtcgcagcggctggtgggcgaaaagcac
ctggcgctcaagctcaagcaccagggccagccgatcgatgcgatctggttcagccacacc
gagccgctgccgccgcgcgtgaagctggccttccggctcgatgcggacgagtggcagggc
gtgcgccggctgcgcttcctggtcgagggggcggaggtctga
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