Variovorax sp. 38R: IG196_05335
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Entry
IG196_05335 CDS
T10235
Name
(GenBank) RsmB/NOP family class I SAM-dependent RNA methyltransferase
KO
K03500
16S rRNA (cytosine967-C5)-methyltransferase [EC:
2.1.1.176
]
Organism
vav Variovorax sp. 38R
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vav03009
]
IG196_05335
Enzymes [BR:
vav01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.176 16S rRNA (cytosine967-C5)-methyltransferase
IG196_05335
Ribosome biogenesis [BR:
vav03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
IG196_05335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Methyltr_RsmB-F
RsmF-B_ferredox
MTS
Methyltransf_31
Ubie_methyltran
Methyltr_RsmF_N
TRM5-TYW2_MTfase
Cons_hypoth95
GCD14
Methyltransf_25
Methyltransf_14
Motif
Other DBs
NCBI-ProteinID:
QOF79822
LinkDB
All DBs
Position
1202012..1203283
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AA seq
423 aa
AA seq
DB search
MHPKALLEATADLVGLVLKFDHPADQVVSRFFRDHREFGPRERATLAETVYTVLRKKLLF
DHLSPSGSGSKERRMAILGFHGPRDFLKSALNDTEKRWLDNCDAVTPDDLLERHRHNLPE
WLVAPLKAQLGDGFWPMVESLQQPAPLDLRVNAFTDKRAEVKAELAKAAIKSVVTPFSPW
GLRIEGKPALTKLDAFVRGAIEVQDEGSQLLALLLDAKRGEMVVDFCAGAGGKTLAIGAT
MRNTGRLYAFDTSAHRLDALKPRLARSKLSNVHPAAIAHERDDRVKRLAGKIDRVLVDAP
CSGLGTLRRNPDLKWRQSAKSVAELTAKQTAILQSAARLVKSGGRLVYATCSVLPEENEA
IAEAFAAANPDFEPMDAAELLQSLKVEGAEALCAGGEDGRRYLRLWPHRHATDGFFAAVW
NRK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgcatcccaaagccctgttggaggccaccgccgatctggtcggccttgtcctgaaattc
gatcacccggccgaccaggtcgtttcgcgctttttccgcgaccaccgcgagttcggcccg
cgcgagcgcgcgacgctcgccgagaccgtctacaccgtgcttcgcaagaagctgctgttc
gatcacctgtcgccctcgggcagcgggtcgaaggagcgccgcatggcgatcctgggcttt
cacggcccgcgcgactttctgaagagcgcgctcaacgacaccgagaagcgctggctcgac
aactgcgacgccgtcacacccgacgacctgctcgaacgccatcgccacaacctgcccgaa
tggctggtcgcgccgctcaaggcgcagctgggcgacggcttctggccgatggtcgagagc
ctgcagcagccggcaccgctcgacctgcgcgtcaatgcattcacggacaaacgggccgaa
gtgaaggcggagcttgcgaaggctgctatcaaatcggtagtaacgccgttctcgccctgg
ggtttgcgcatcgagggcaagcccgcgctgaccaagctcgacgcgttcgtccgcggcgcc
atcgaggtgcaggacgaaggctcgcagctgctggcgctgctgctggacgccaagcgcggc
gaaatggtggtcgatttctgcgccggcgccggcggcaagaccctggccatcggcgcgacc
atgcgcaacaccggccggctctacgccttcgacacctcggcccatcgcctggacgcgctc
aagccgcggctggcgcgcagcaagttgtcgaacgtgcacccggcagcgatcgcccacgag
cgcgacgaccgggtcaagcgcctggccggcaagatcgaccgcgtgctggtcgacgcgccc
tgttcggggctcggcacgctgcgccgaaaccccgacctcaaatggcggcaatcggccaag
tcggtggccgagctgacggccaagcagaccgccatcctgcaaagtgcggcgcggctcgtg
aagtcgggcggccggctggtgtacgccacctgcagcgtgctgccggaagaaaacgaggcc
atcgccgaggcttttgccgccgcgaaccccgatttcgagcccatggacgcggcggaattg
ctccaaagcctcaaggtggagggcgccgaggccctctgcgcgggtggagaagacggccgc
cgctacctgcggctgtggcctcatcgccacgccaccgacggcttttttgccgccgtgtgg
aaccggaaatag
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