Variovorax sp. 38R: IG196_06720
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Entry
IG196_06720 CDS
T10235
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
vav Variovorax sp. 38R
Pathway
vav02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IG196_06720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vav03021
]
IG196_06720
Transcription machinery [BR:
vav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IG196_06720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_20
Sigma70_ECF
HTH_23
HTH_24
Motif
Other DBs
NCBI-ProteinID:
QOF80086
LinkDB
All DBs
Position
1528151..1528654
Genome browser
AA seq
167 aa
AA seq
DB search
MPAAGPSVTPIEALYSDHHGWLLAWLRRRLGDACDAADLAHDTFVRLMVSSRTAPLGDEP
RAFLTHVAKGLVADHWRRREVERAYLEAIAHLPEPQAPSPEARMLIIESLLRIEAMLASL
PARTRQVFLLAQFDELTLAQIAERVAMPVITVRRHIHKALVACMSVA
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcggccggaccttccgtcacccccatcgaagcgctctacagcgaccaccacggc
tggttgctggcgtggctgcgccgccgcctgggcgacgcctgcgatgcggccgatctggcg
cacgacaccttcgtgcggctcatggtgtcctcgcgcaccgccccgctcggcgacgagccg
cgcgcgttcctgacgcacgtcgccaaggggctggtggccgaccattggcgccggcgcgag
gtggagcgcgcctacctcgaggcgattgcgcacctgcccgagccgcaggcgccttcgccc
gaagcccgcatgctcatcatcgaatcgctgctgcgcatcgaggcgatgctcgccagcctt
ccggcgcgcacgcggcaggtcttcctgctcgcgcagttcgacgagctcacgctcgcgcag
atcgccgagcgcgtggccatgcccgtgatcacggtgcgccgccacatccacaaggcgctc
gtcgcctgcatgtccgtggcctga
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