KEGG   Variovorax sp. 38R: IG196_12060
Entry
IG196_12060       CDS       T10235                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vav  Variovorax sp. 38R
Pathway
vav03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IG196_12060 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vav03400]
    IG196_12060 (ligD)
Enzymes [BR:vav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IG196_12060 (ligD)
DNA repair and recombination proteins [BR:vav03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IG196_12060 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QOF81065
UniProt: A0A7L8SNM5
LinkDB
Position
complement(2658226..2660781)
AA seq 851 aa
MARSDTSTLTPLATYQAKRDFTATTEPAEGGKPRPHAPSFVIQKHAARRLHYDFRLELDG
VLVSWAVPKGPSLDPAQKRMAVHVEDHPLSYAGFEGTIPEGHYGAGEVIVWDRGTWEPVG
DPRKGLAAGKLAFRLHGEKLEGLWELIKIAKRGERQEPWLLFKKRDDFARSHAEYDVVSA
LPDSVGGAPAPRRAASKKTKAKAAPDMPVTGAVKARLPAKLSPQLATLATGVPEGAPGDW
LFEIKFDGYRVMARIEKGKARLLTRGGHDWSAKLPSLVAELERLGIDNAWLDGEIVVLDK
QGTPDFNALQNALDRERADPIVMFLFDVPFFEGFDLRYAPLAERRRLLKQLMDARATRRL
RFSNDFEADIDSILQSACRMNLEGVIAKRADAPYVSRRSDTWLKLKCIRRQEFVVCGYTL
RTDSPTRIGSLMLGVHAKNGKLVSVGGVGTGWNDREARDIRRQLAALDTDRAPFTGGEAK
PGRRRPGGMRHWVKPTLVAEVRFAAWTPDGQIRHASFVAMRDDKPASEIVHEEPRDIAPA
SKKTKTMKTSSKKAASTVGGVTVSHGDRVIDAASGRTKLDLVRYYESVAEPMLPHLKGRP
CALVRGPQGVGGEIFFQKHAEKVHIAGVKQLDPALWPGHPSMLEVGTREALLNAAQFNVI
EFHTSNATSTHFDRPNRMIFDLDPGEGTPWAHVQEAALLMRTLLTELGLASWLKTSGGKG
LHVVVPLRMHYDNDTVKAFSRAIVQHMAQVIPSKFVAKSGPSNRVGKLFADYLRNGVGAT
TVAAFSARARPGMGVSMPVSWDDLGSLKSGAHWTIATAREHLSFQSEDPWADYWTTRQPL
GEAMKRLGFKK
NT seq 2556 nt   +upstreamnt  +downstreamnt
atggcccgttccgacacgtccacgctcacgcccctggcgacctaccaggccaaacgcgat
ttcaccgccaccaccgaacccgccgagggcggaaagccccgcccgcacgcgccctccttc
gtgatccagaagcacgcggcgcggcggctgcactacgacttccgactcgaactcgacggc
gtgctggtgtcgtgggccgtgccgaaggggccgagcctcgaccctgcgcagaaacgcatg
gccgtgcatgtggaagaccatccgctgtcgtatgccggcttcgaaggcaccattccggaa
ggccactacggcgcgggcgaagtcatcgtgtgggaccgcggcacctgggagccggtgggc
gatccgcgcaagggcctggccgcgggcaagctcgcgttccggctgcacggcgagaagctc
gaagggctgtgggagctcatcaagatcgccaagcgcggcgagcggcaggagccgtggctg
ctgttcaagaagcgcgacgacttcgcgcggtcgcatgcggagtacgacgtggtgtcggcg
ctgcccgacagcgtaggcggtgcgcctgcgccccggcgcgcagcgagcaagaagacaaag
gcgaaggctgcgcccgacatgcctgtcacgggtgcggtgaaggcccgcctgcccgccaag
ctctcgccgcagctcgcgacgctggccaccggcgtgcccgaaggcgcgcccggcgactgg
ctgttcgaaatcaagttcgacggttaccgcgtcatggcgcgcatcgaaaagggcaaggcg
cgcctgctcacgcgcggcggccacgactggagcgcgaagctgccgtcgctggtggccgag
ctggagcgcctgggcatcgacaacgcctggctcgacggcgagatcgtcgtgctcgacaag
caaggcacgcccgacttcaacgcgctgcagaacgcactcgaccgcgaacgcgccgacccc
atcgtgatgttcctgttcgacgtgcccttcttcgagggtttcgacctgcgctacgcaccg
ctcgccgaacgccgccgcctgctcaagcagctgatggacgcacgggccacgcgccgcctg
cgcttcagcaacgacttcgaggccgacatcgactcgatcttgcaatcggcctgccgcatg
aacctcgaaggcgtgatcgccaagcgcgccgacgcgccgtatgtctcgcgccgcagcgac
acctggctcaagctcaagtgcatccggcgccaggagttcgtggtgtgcggctacacgctg
cgcaccgacagcccgacgcgcatcggcagcctgatgctgggcgtgcacgcgaagaacggc
aagctggtgtcggtgggcggtgtcggcaccggctggaacgaccgcgaggcgcgcgacatc
cgccgccaactggccgcgctcgacaccgaccgcgcgccgttcaccggcggcgaggccaag
cccggccggcgccggccgggcggcatgcggcactgggtgaagccgacgctcgtggccgag
gtgcgctttgccgcatggacgccggacgggcagatccgccacgcgtcgttcgtggcgatg
cgcgacgacaagccggcctcggagatcgtgcatgaagaacctcgcgacatcgcacctgcc
tcgaagaaaacgaagaccatgaagacatcctcgaagaaggccgcgtccacggtcggcggc
gtgactgtgagccatggcgaccgcgtgatcgatgcggcgtcgggccgcaccaagctcgac
ctggtgcgctactacgaatcggtggccgagcccatgctgccccacctgaagggccgccct
tgcgcgctggtgcgcgggcctcaaggcgtgggcggcgagatcttcttccagaagcacgcc
gagaaggtccacatcgccggcgtgaagcagctcgacccggccctgtggcccggccatccg
tcgatgctcgaggtcggcacgcgcgaggccctgctgaacgcggcgcagttcaacgtgatc
gagttccacacgtccaacgcgacctcgacgcacttcgaccggcccaaccgcatgatcttc
gacctcgacccaggcgaaggcacgccgtgggcgcatgtgcaggaagccgcgttgctgatg
cgcacgctgctcaccgaactcggcctggcgtcatggctcaagaccagcggcggcaagggc
ctgcacgtggtcgtgccgctgcgcatgcactacgacaacgacacggtgaaggccttctcg
cgcgccatcgtgcagcacatggcgcaggtgatcccctcgaagttcgtggccaagagcggg
ccgtcgaaccgcgtcggcaagctctttgccgactacctgcgcaatggcgtgggcgcgacc
acggtggcggccttttcggcgcgcgcgcggcccggcatgggcgtgtcgatgccggtgagt
tgggacgacctcggcagcctgaaaagcggcgcgcactggaccattgccaccgcgcgcgag
cacctgtcgttccagtccgaagacccgtgggccgactactggaccacgcgccagccgctg
ggcgaggcgatgaagcggctcggcttcaagaaataa

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