Variovorax sp. 38R: IG196_13665
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Entry
IG196_13665 CDS
T10235
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vav Variovorax sp. 38R
Pathway
vav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IG196_13665 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vav03019
]
IG196_13665 (rnr)
03016 Transfer RNA biogenesis [BR:
vav03016
]
IG196_13665 (rnr)
Enzymes [BR:
vav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IG196_13665 (rnr)
Messenger RNA biogenesis [BR:
vav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IG196_13665 (rnr)
Transfer RNA biogenesis [BR:
vav03016
]
Prokaryotic type
tRNA degradation factors
IG196_13665 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QOF81903
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Position
2994583..2996877
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AA seq
764 aa
AA seq
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MKNNVTSSSLLDEIEGTVQGHRDGHGFVQRDDGEADIYLPPNEMRAVLHKDRVKARIVRQ
DRRGRPEGRVVEIVERPEQPIIGRLLHEGGIWLVAPEDKRYGQDVLIPKGATGPAKVGQV
VVVQLTEPPALFGQPVGRVREVLGEIDDPGMEIEIAVRKYGVPHEFSAECLALAKALPEK
VRPADKKGRIDLTDVPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSAYVQT
GSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVAADGEIYAY
QFYPAVMFSHARFTYTEVAAILGNTRGPEAAKRKERVKDLLNLADVYKALLKQRSKRGAV
DFETTETQIICDDAGRIEKIVPRTRNEAHKIIEEAMLAANVCSADFIAEGKHPGLFRVHE
GPTPEKKEILRGYLKAMGVGLSITDDPRPGEFQAIAEATKERPDSQQIHTMLLRSMQQAI
YTPFNSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGKTRYQLPMLPTPGEAHAKLA
KRLASRVKAPTTKPQKATIAPTKEVLAWEAAGLHCSANERRADEASRDVEAWLKCKYMRE
HLGEEYGGVVSAATTFGIFVTLDAMYVEGLVHITELGGEYFKFDEMRQELRGERTGIRYA
IGTRVRVQVSRVDLDGRKIDFRLVREGEDLTSRAMKDKGSAPVKASTKRSARHKAEAGGE
PRSEHGSGVAVAAVGPQSAMQAFKSAVKKAANKMQGKGRKPRRG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atcaaaaataatgtcacttccagcagcttgttggacgaaatcgaaggaactgttcaagga
catcgcgacgggcacggcttcgtgcaacgcgacgacggcgaggccgacatttacctgccg
ccgaacgaaatgcgcgcggtgctgcacaaggatcgcgtcaaggcgcgcatcgtgcgacag
gaccgccgcggccgccccgaagggcgcgtggtcgagatcgtcgagcggcccgagcagccg
atcatcggccgcttgctgcacgaaggcgggatctggctcgttgcaccggaagacaagcgc
tacggccaggacgtcctgatcccgaagggggccaccggccctgccaaggtcggtcaggtg
gtggtcgtccagctcaccgagccgccggccttgttcggccagcccgtgggccgcgtgaga
gaagtgctgggcgagatcgacgaccccggcatggaaatcgagatcgccgtgcgcaagtac
ggcgtgccgcatgagttttccgcggagtgcctggcgctggccaaggccctgcccgagaag
gtgcgccccgccgacaagaagggccgcatcgacctcaccgacgtgccactcgtcaccatc
gacggcgaagacgcccgagacttcgacgacgccgtgtactgcgagcccgcgaaggtgggg
cgcggcaagggctggcgactgctggtggccatcgccgacgtcagtgcttatgtgcagacc
ggctcggccatcgacatcgatgcgtacgaccgcgccaccagtgtctacttcccgcgccgc
gtgattccgatgctgccagagaagctctcgaacggcctgtgctcgctcaaccccgaggtc
gagcgcctgtgcatggtgtgcgacatgctggtcgcggccgacggcgagatctacgcctac
cagttctatccggccgtgatgttcagccatgcgcgcttcacgtacaccgaagtcgcggcc
atcctcggcaacacgcgcggccccgaagccgccaagcgcaaggagcgcgtcaaggacctg
ctgaacctcgccgacgtatacaaggcactgctcaagcagcgcagcaagcgtggtgcggtc
gacttcgaaaccaccgagacgcagatcatctgcgatgacgccggccgcatcgagaagatc
gtgccgcgcacgcgcaacgaggcgcacaagatcatcgaagaagcgatgctcgccgccaac
gtctgcagcgccgacttcatcgccgaaggcaagcacccgggcctgttccgtgtgcacgaa
ggtccgacgccggagaagaaggaaatcctgcgcggctacctgaaggccatgggcgtgggc
ttgagcatcaccgacgatccgcgtcccggtgagttccaggcgatcgccgaagccaccaag
gaacgtcccgactcgcagcagatccacacgatgctgctgcgctcgatgcagcaggcgatc
tacacgccgttcaacagcggccacttcggcctggcctacgaggcttacacgcacttcacg
agcccgatccgtcgctaccccgacctgctggtgcaccgcgtgatcaaggcgatcctcggc
aagacgcgctaccagttgccgatgctgccgacaccgggcgaggcgcatgccaagctggcc
aagcgcctggcttcgcgtgtgaaggcgccaacgaccaagccgcaaaaagccacgatcgca
ccgaccaaggaagtgctggcatgggaagcggcgggcctgcattgcagcgccaacgaacgc
cgcgccgacgaggccagccgcgacgtcgaggcctggctcaagtgcaagtacatgcgcgag
cacctcggcgaggagtatggcggcgtggtctccgcggccaccaccttcggcatcttcgtc
acgctcgatgcgatgtacgtcgagggcctggtccacatcaccgagctcggcggcgaatac
tttaagttcgacgagatgcgccaggagctgcgcggcgagcgcaccggcatccgctacgcc
atcggcacgcgggtgcgggtgcaggtgagccgtgtcgacctcgatggccgcaagatcgat
ttccgcctcgtgcgcgaaggtgaagacctgacctcgcgcgccatgaaggacaaaggtagc
gcaccggtgaaggcctcgaccaagcgaagcgcccgccacaaggcggaggccggtggcgag
ccgcgttcggagcacggcagtggcgttgccgtggcggccgtcggcccgcagtcggccatg
caggccttcaagtcggcggtgaagaaagccgccaacaagatgcagggcaaggggcgcaag
cctcgccgtggatga
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