Variovorax sp. 38R: IG196_13780
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Entry
IG196_13780 CDS
T10235
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
vav Variovorax sp. 38R
Pathway
vav00220
Arginine biosynthesis
vav00240
Pyrimidine metabolism
vav00250
Alanine, aspartate and glutamate metabolism
vav01100
Metabolic pathways
vav01110
Biosynthesis of secondary metabolites
vav01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
IG196_13780 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
IG196_13780 (carB)
00220 Arginine biosynthesis
IG196_13780 (carB)
Enzymes [BR:
vav01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
IG196_13780 (carB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
ATPgrasp_Ter
Dala_Dala_lig_C
ATP-grasp_4
ATP-grasp_3
ATP-grasp_5
HTH_50
Motif
Other DBs
NCBI-ProteinID:
QOF81375
LinkDB
All DBs
Position
3019098..3022346
Genome browser
AA seq
1082 aa
AA seq
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MPKRTDLKSILIIGAGPIIIGQACEFDYSGVQACKALREEGYKVILINSNPATIMTDPAT
ADVTYIEPITWQTVEKIIAKERPDAILPTMGGQTALNCALDLWRNGVLDKYTGAATGKPV
ELVGATPEAIDKAEDRLKFKDAMTKIGLGSARSGIAHTMDEAWAVQKTLGFPTVIRPSFT
LGGTGGGIAYNPDEFETICKRGIEASPTNELLIEESLLGWKEYEMEVVRDKADNCIIVCS
IENLDPMGVHTGDSITVAPAQTLSDKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDG
RMVVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNEITGGATPASFEPSID
YVVTKIPRFAFEKFPQADSRLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGLNEKT
QDREVLEKELGEPGPERIWYVGDAFAMGLSVDEVFALTKIDPWFLVQIEEIVKIELELET
KSLDDIDKDTLLALKKKGFSDRRLAKQLKTSDTAIREKRRALGVRPVYKRVDTCAAEFAT
NTAYMYSTYEDECEAEPTDKKKIMVLGGGPNRIGQGIEFDYCCVHAALAMREDGYETIMV
NCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQYGGQTPLKLALDLEANGV
PIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEALEKAAALGYPLVVRPSYV
LGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLNDAVECDVDCIRDAEGGTLIGGV
MEHIEQAGVHSGDSACSLPPYSLNADTIAELKRQSAAMAKALNVVGLMNVQFAIQQKDGK
DVIYVLEVNPRASRTVPYVSKATGIQLAKVAARCMAGQSLASQGVTKEVTPPYFSVKEAV
FPFVKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQLGAGTLLPKSGKAFISVKNNDK
ARAVEVARGLAKLGFELVATKGTAAAISAAGIACVTVNKVTEGRPHIVDMIKNNEIALVI
NTVEERRNAITDSRQIRTSALLARVTTFTTIFGAEAAVEGMGFMDELGVISVQEMHAQLA
AA
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcgcacagacctcaaatcgatcctcatcatcggcgccggcccgatcatcatc
ggccaggcctgcgagttcgactattccggcgtgcaagcctgcaaggcgctgcgcgaagag
ggctacaaggtcatcctgatcaacagcaaccccgcgacgatcatgaccgacccggccacg
gccgacgtcacctacatcgagcccatcacctggcagacggttgaaaaaatcatcgccaag
gaacgccccgacgcgatcctgccgaccatgggcggccagaccgcactcaactgcgcgctc
gacctctggcgcaacggcgtgctcgacaagtacacgggcgctgccaccggcaagcccgtc
gagctggtcggcgccacgcccgaagccatcgacaaggccgaagaccgcctgaagttcaag
gacgcgatgaccaagatcggtctcggttcggcgcgctcgggcatcgcacacacgatggac
gaagcctgggccgtgcagaagacgctcggcttcccgaccgtgatccgccccagcttcacg
ctcggcggcaccggcggcggcatcgcctacaaccccgacgagttcgagaccatctgcaag
cgtggcatcgaagcctcgccgaccaacgagttgctgatcgaagaatcgctgctcggctgg
aaagagtatgagatggaagtggtccgcgacaaggccgacaactgcatcatcgtctgctcg
atcgaaaacctcgacccgatgggcgtgcacaccggcgactcgatcaccgtggcacccgca
cagacgctgtccgacaaggaataccagatcctgcgcaacgcctcgctggctgtgctgcgc
gagatcggcgtggacaccggcggctcgaacgtgcagttctcgatcaacccgaaggacggc
cgcatggtcgtcatcgagatgaatccgcgcgtctcgcgttcgtcggcgctggcctccaag
gccacgggcttcccgatcgccaaggtcgcggccaagctggccgtgggctacacgctcgac
gagctgcgcaacgaaatcaccggcggcgccacgcccgcgtcgttcgagccttcgatcgac
tatgtggtcaccaagattccgcgtttcgccttcgagaaattcccgcaggccgactcgcgc
ctcaccacgcagatgaagtcggtgggcgaggtcatggccatgggccgcaccttccaggag
tcgttccagaaggccctgcgcggcctcgaagtgggcgtcgacggcctgaacgaaaagacg
caggaccgcgaagtgctcgagaaggagctgggcgagcctggtcccgagcgcatctggtac
gtgggcgatgccttcgccatgggcctgagcgtggacgaagtgttcgcgctgaccaagatc
gacccgtggttcctggtgcagatcgaagagatcgtgaagatcgaactcgagctggaaacc
aagtcgctcgacgacatcgacaaggacacgctgctggcgctcaagaagaagggcttctcc
gaccgtcgccttgccaagcaacttaagacctccgacacggcgatccgcgagaagcgccgc
gccctgggtgtgcgccccgtctacaagcgcgtggacacctgcgcggccgagttcgcgacc
aacaccgcctacatgtactcgacctatgaggacgagtgcgaagccgagccgaccgacaag
aagaagatcatggtgctcggcggcggtcccaaccgcatcggccagggcatcgagttcgac
tactgctgcgtgcacgccgcgctcgccatgcgcgaagacggctacgagaccatcatggtc
aactgcaatcccgagaccgtgtcaaccgactacgacacctccgaccgcctgtacttcgag
ccgctcacgctcgaagacgtgctcgagatcgtcgacaaggaaaagccgctcggcgtgatc
gtgcagtacggcggccagacgccgttgaagctcgcgctcgacctcgaagccaacggcgtg
ccgatcatcggcacctcgcccgacatgatcgatgcggccgaagaccgtgagcgcttccag
aagctgctgcacgagctgggcctgcgccagccgccgaacgccaccgcgcgcaccgaaccc
gaagcgctcgaaaaggctgcggccctgggctacccgctggtggtgcgcccgagctacgtg
ctcggcggccgcgcgatggaaatcgtgcacgagcagcgcgacctcgagcgctacatgcgt
gaagcggtcaaggtgagcaacgactcgccggtgctgctcgaccgcttcctgaacgacgcc
gtcgaatgcgacgtcgactgcatccgcgacgccgaaggcggcacgctgatcggcggcgtg
atggagcacatcgaacaggccggcgtgcactcgggcgactccgcctgctcgctcccgcct
tacagcctgaacgccgacaccatcgctgaactgaagcgccagagcgccgcgatggccaag
gcgctgaacgtggtcggcctgatgaacgtgcagttcgccattcagcaaaaagatggcaag
gacgtcatctacgtgctcgaagtgaacccgcgtgcgtcgcgcaccgtgccttacgtgagc
aaggccaccggcattcagctcgccaaggtggcggcacgctgcatggcgggccagtcgctc
gcgtcgcaaggtgtgaccaaggaagtgacgccgccgtacttcagcgtgaaggaagccgtg
ttcccgttcgtcaagttcccgggcgtggacaccatcctcggccccgagatgaagtcgacc
ggcgaagtgatgggcgtgggcaagaccttcggcgaagccttcgtgaagtcgcagctgggc
gcgggcaccttgctgccgaagtcgggcaaggccttcatctcggtgaagaacaacgacaag
gcacgtgccgtcgaagtggcacgcggcctggccaagctgggcttcgaactggtcgccacc
aagggcaccgccgcggccatcagcgccgccggcattgcctgcgtgacggtcaacaaggtg
accgaaggccgtccgcacatcgtggacatgatcaagaacaacgagattgccttggtcatc
aacacggtggaagagcgccgcaacgcgatcaccgactcgcgccagatccgcacctcggca
ctgctggcgcgcgtgaccaccttcaccacgatcttcggcgccgaagccgcggtggaaggt
atgggcttcatggacgagctgggcgtgatctcggtgcaggagatgcacgcgcagctggcc
gctgcctga
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