Variovorax sp. 38R: IG196_16530
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Entry
IG196_16530 CDS
T10235
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vav Variovorax sp. 38R
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vav03400
]
IG196_16530
Enzymes [BR:
vav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IG196_16530
DNA repair and recombination proteins [BR:
vav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
IG196_16530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
DUF2095
Cas_Cas4
Motif
Other DBs
NCBI-ProteinID:
QOF76024
LinkDB
All DBs
Position
complement(3591657..3594212)
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AA seq
851 aa
AA seq
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MNEGHPVQALWCDPADGVVARIVRALGDRQLHAARTVVLVPYAQLMAVARGMWARCGSPG
FVPRFETTHNWARSAGGFLPSGYDIAFDMARDLVTAQGLLAQSGFQSERFALAGRVVELA
YQLAPLAAAVTPELRSSDWAQSAAKVADAGSESEWFRIESALIRVAVAWAANSGYATDVL
LRDTARTQVDALIVLEGFQTDPLTQALCALWGDRAIRIPLVPADAPPSAAHAHVALDPED
EAQLAAACVLQHLAEGRAPVALVATDRALTRRISAQLSTQGIVTHDETGWKLSTTRAAAT
LMSALRACAHDTATDQVLEWLKSGAEVDVHAVQSLEMRLRREGVRDWQAWCALVARSEKP
QDEALRAFTLTIEARRAPMARARSLADWHRALRELLTVGEQWDALTADFAGAKVIGALWL
DADAHGEEDEFPGGRHSLAEFTAWARDVLEDASFVPPAGDETPKVSVLPMNQLLGRVFGA
VVIPGCDDRRMPASPEPPGNWSAAQRLDLGLASRDVLEVAQRAAWAMATRNPCCDLVWRH
SDASGEPVRPSPLVQALQLAHALQPGIDPRTPRDVAVTPTLRPTPSGALLPLTNVSTSVY
EDLRRCPYRFFALRQLGLRTADELDAEVDKRDFGNWLHAVLGQFHETLRDAPTSDAQARA
ALLADTARDVTQALGYSDAEFLPFAAAWPAVRDGYLEWLVKHEAGGAVFVEAEPWKEQPL
GTLRLVGRLDRVDRTADGQPFVIDYKTETASVTKERVESPTEDTQLAFYAALIADDTLRA
AYVNVGEKSSGTRTVEQPAVVEARDALVAGIIDDFARIAQGAPLPPLGEGSVCDFCAARG
LCRKDFWEVTP
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaggccaccccgtccaggccctgtggtgcgatcccgccgacggcgtcgtcgcg
cggatcgtgcgcgcgctcggcgatcggcagctgcacgcggcgcgcaccgtggtgctggtg
ccgtatgcgcagctgatggcggtcgcgcgtggcatgtgggcgcgctgcggcagcccgggc
ttcgtgccgcgcttcgaaaccacgcacaactgggcgcgcagcgcgggcggtttcctgccg
tccggctacgacatcgccttcgacatggcgcgcgacctggtcacggcgcagggcctgctc
gcgcagtcgggcttccagtccgaacgctttgcgctcgccgggcgcgtggtcgagctggcc
tatcagctggcgccgttggccgctgccgtgacgccagagctgcgcagcagcgactgggca
cagagtgcagccaaggtggccgacgcaggcagcgagtcggagtggttccgcatcgagagc
gccttgatccgcgtcgccgtggcctgggctgcgaactcgggctacgcgaccgacgtgctg
ctgcgcgacaccgcacgcacccaggtcgacgcgctgatcgtgctcgaaggcttccagacc
gatccgctgacgcaggcgctgtgcgcgctgtggggcgaccgcgcgatccgcatcccgctc
gtgcccgccgacgcaccgccgtctgcggcccacgcccacgtggcgctcgaccccgaagac
gaggcccagctggccgctgcttgcgtgctgcagcacctggccgaggggcgcgcgcccgtc
gcgctcgtcgccaccgaccgcgcgctgacgcgtcgcatcagcgcacagctgagcacccaa
ggcatcgtcacgcacgacgaaactggctggaagctgtccaccacgcgcgccgccgccacg
ctgatgagcgcactgcgcgcctgcgcgcacgacaccgccaccgaccaggtgctcgaatgg
ctcaagagcggcgccgaggtcgatgtgcacgccgtccagtcgctcgaaatgcggttgcgg
cgcgaaggcgtgcgcgactggcaggcgtggtgcgcgttggtcgcgcgcagcgaaaaaccg
caagacgaggcactgcgcgccttcaccctcaccatcgaagcccgccgcgccccgatggcg
cgcgcgcgctccctggccgactggcaccgcgcgctgcgcgagctgctgacggtcggcgaa
cagtgggatgcgctcaccgccgacttcgcaggcgccaaggtcatcggagccctctggctc
gatgccgacgcgcacggtgaagaagacgagttccccggcggacgccacagcctggccgag
ttcacggcctgggcgcgcgacgtgctcgaagacgccagcttcgtgccgcccgccggcgac
gagacccccaaggtgtccgtgctgccgatgaaccagttgctgggccgcgttttcggcgcg
gtcgtcattcccggctgcgacgaccgccgcatgcccgcatcgcccgaaccgccgggcaac
tggagcgcggcacagcgcctcgacctggggctggcgtcgcgcgacgtgctggaggtcgcg
cagcgcgcggcttgggccatggccacgcgcaacccgtgctgcgacctggtctggcgccat
tccgacgccagcggcgaacccgtgcggccgagcccgctcgtgcaggccctgcagctcgcc
catgcactgcagccgggcattgatccgcgcacgccacgcgatgtcgccgtcacgccgacc
ctgcgccccacgccctcgggcgcgctgctgccgcttaccaacgtgtcgaccagcgtctac
gaagacctgcggcgctgtccctatcgctttttcgcgctgcgccagctgggcctgcgcact
gccgacgagctcgatgcggaggtcgacaagcgcgacttcggcaactggctgcacgcggtg
ctcggccagttccacgagaccttgcgcgacgcgccgacgagcgatgcgcaagcgcgcgct
gcgctgctcgccgacaccgcacgcgatgtcacgcaggcgcttggctattccgacgccgag
ttcctgccgttcgccgccgcgtggccggcggtgcgcgacgggtacctcgaatggctcgtg
aagcatgaagcgggcggggcggtcttcgtcgaggccgaaccctggaaagagcaaccgctg
ggcactctgcggctggtcggccggcttgaccgcgtcgatcgcaccgcggacggccagccc
ttcgtgatcgactacaagaccgagactgcctccgtcaccaaggagcgcgtggaaagtccg
accgaggacacgcagcttgccttctacgcggcgttgatcgccgacgacacgctgcgcgcg
gcctacgtcaacgtcggcgagaaatcctcgggcacgcggaccgtcgagcagccggccgtg
gtcgaggcgcgcgatgcgctggtcgccggcatcatcgacgacttcgcgcgcatcgcgcag
ggcgcgccgttgccgccgctgggcgagggcagcgtctgcgatttctgcgccgcacgcggc
ctgtgccgcaaggatttctgggaggtcacgccatga
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