Variovorax sp. 38R: IG196_17380
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Entry
IG196_17380 CDS
T10235
Name
(GenBank) type I secretion system permease/ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vav Variovorax sp. 38R
Pathway
vav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
IG196_17380
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vav02000
]
IG196_17380
02044 Secretion system [BR:
vav02044
]
IG196_17380
Transporters [BR:
vav02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
IG196_17380
Secretion system [BR:
vav02044
]
Type I secretion system
Adhesin protein transporter
IG196_17380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
Peptidase_C39
SMC_N
AAA_29
Zeta_toxin
DLIC
Motif
Other DBs
NCBI-ProteinID:
QOF81960
UniProt:
A0A7L8SRC6
LinkDB
All DBs
Position
complement(3752127..3754271)
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AA seq
714 aa
AA seq
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MSLYEPGLLAGLVRLCRAHGVNASAESLGDGLVREPGVLPFGQVERAMRRANMTCGLVAL
PLKQLSAHAMPVLLLMRDGSCLVLEKLTPTTAEVAYAEPSAGRGAMSREELEASYAGCYL
IAKHIEVVSPHLDATFDAKPGHWMLGPIWEQWHVYRDVLLASLMANLLAVGVALFSMQVY
DRVVPNAAFDTLWVLASGVAVAIALEWVLRYLRARLIDSSGRELDLRLSVQLFERVVHMR
LAHQPTSVGAFANQVRDFASVREFFTSGTLATLCDLPFVVFILALIGFIGGWVAVVVLAA
VVLIALPGILMQKKLAALSRQNTRESAALNGLLLEAVDNLENVKATRSEERLQKAHARLT
AVMVDSGGKTRDITTTLQLMAGSTQQLCYTAVVIVGVYLIAGGTLTTGGMVACTLLSSRA
LSPMSQVASLLTRWQFVKAAMEGLDRIVSLPLERPPGRHFARAERIRGAYQLDNVTYAHT
PDSPPALRIARLAIQAGEQVALLGGNGAGKSTLMRLMAGLTDPQQGSVLLDNLALSQIDP
IDRRRQIGYLPQNVGLFQGTLRENLTLGHPLWSDAELLKALDAVGLGAFVRRNVRGLDQD
ILSIGNISGGQRQAIGLARVILQEPRVVILDEPTSAFDQASEARVIEFMKDWLKGRTALI
ATHKRDLLALTQRAVVLNEGRVVHDGDMSSMFMQGAKRPANAVGIKVVTGGAAP
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtccctttacgagcccggcctgctggccgggttggtgcgcctgtgccgggcccatggg
gtgaacgcctcggccgagagcctgggcgacggcctggtgcgcgaaccgggcgttctgcct
ttcggccaggtcgagcgagccatgcggcgcgccaacatgacgtgcggcctggtggcgctg
ccgctcaagcagctgtcggcccacgccatgcccgtcctgctgctgatgcgcgacggcagc
tgcctggtgctggagaaactgaccccgaccaccgccgaggtcgcctacgccgagccgagc
gccggacgcggcgccatgtcgcgcgaggagctcgaagcaagctacgcgggctgctacctg
atcgccaagcacatcgaggtggtttccccgcacctggatgccaccttcgacgccaagcct
ggccactggatgctcgggccgatatgggagcaatggcacgtctatcgcgacgtgctgttg
gcatcgctgatggccaacctgctggccgtgggggtggcgctgttctccatgcaggtctac
gaccgcgtcgtgcccaatgccgcattcgacaccttgtgggtgctcgctagcggcgtggcc
gtggccattgcgctggagtgggtgctgcgatatctgcgggcccggctgatcgacagcagc
ggccgcgaactggacctgaggctgtcggtccagctgttcgagcgcgtggtgcacatgcga
ctggcgcaccagcccacctccgtcggcgcattcgccaaccaggtgcgcgacttcgccagc
gtgcgcgagttcttcacttcgggaacattggccacgttgtgcgacctgcctttcgtggtg
ttcatattggccttgatcggattcatcggcggctgggtcgcggtggtggtgctcgcggcc
gtggtgctcatcgcgctgcccggcatcttgatgcagaagaagctggcggcgctgtcgcgt
cagaacaccagggaaagcgcggcgctcaatgggctgctgctggaagccgtcgacaatctg
gagaacgtcaaggccacgcggtcggaagaacgcctgcaaaaggcccatgcccgtctcacg
gccgtcatggtggactcgggaggcaagacgcgcgacatcaccaccacgctgcagctcatg
gcaggcagcacgcagcagctgtgctacaccgcggtcgtcatcgtcggtgtgtacctgatc
gcgggaggcacgctcaccacgggcggcatggtcgcttgcacgctgctctcgagccgggcg
ctgtcgcccatgagccaggtggccagcctgctgacgcgctggcagttcgtcaaggcagcc
atggaaggactggaccgcatcgtcagcctgcctttggagcgcccgcccggcaggcatttc
gcacgggccgaacgcatccgaggcgcctatcagctggacaacgtcacgtatgcgcacacg
ccggacagcccaccagccttgcggatcgcgcggctggcgatccaggccggcgagcaggtg
gcgctcctgggcggcaacggcgcgggcaagtcgacattgatgcgcctgatggccgggctc
accgatccacagcagggcagcgtgctgctggacaatctcgcgctgtcgcagatcgacccc
atcgatcgccgccggcagatcggctacctgccgcagaacgtggggctgttccagggcacc
ctgcgcgagaacctgacgctgggccatccactgtggagcgatgccgagctactcaaggcg
ctggatgccgtcgggctgggggctttcgtgcgcaggaatgtgcggggactggaccaagac
atcctgtccatcggcaacatctcgggcggacagagacaggccatcgggctggctcgcgtc
atcctgcaggagcccagggtggtgattctggacgaacccacgtcggcctttgaccaggcc
agcgaggcgcgcgtgatcgaattcatgaaggattggctcaagggccgtactgcgctcatc
gccacgcacaagcgcgacctcctggcgctcacgcaacgggccgtcgtgctgaacgaaggc
cgtgtcgtccacgacggcgacatgagcagcatgttcatgcagggcgccaagcgcccggcc
aacgccgtcggcatcaaggtcgtgacgggtggagcggcgccatga
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