Variovorax sp. 38R: IG196_20470
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Entry
IG196_20470 CDS
T10235
Name
(GenBank) type I secretion system permease/ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vav Variovorax sp. 38R
Pathway
vav02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
IG196_20470
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vav02000
]
IG196_20470
02044 Secretion system [BR:
vav02044
]
IG196_20470
Transporters [BR:
vav02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
IG196_20470
Secretion system [BR:
vav02044
]
Type I secretion system
Adhesin protein transporter
IG196_20470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
AAA_29
AAA_22
AAA_23
MMR_HSR1
RsgA_GTPase
NACHT
DLIC
AAA_25
AAA_27
HTH_31
AAA_16
AAA_30
DUF87
AAA_15
Motif
Other DBs
NCBI-ProteinID:
QOF76725
UniProt:
A0A7L8SBC2
LinkDB
All DBs
Position
complement(4438316..4440508)
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AA seq
730 aa
AA seq
DB search
MTATTMPELSAARGPELLAGWVDAVLAVAAHYHLDTSRERIRGAAAWSDHEDIGERVRQM
ARQAGLTVRQVAPRLDTLSPWRLPVVLQLRDGQVAVVTAISAQGLRVMLGGDQGAETVCT
IDELQPALEAMAVLRPAQSAPDSRVDAYIRPVEPHWLRQIVLADWRPYAHILVASLAYNL
MALAGTLFSMQVYDRVVPAQSLPTLHVLFGGVLLSIAFSWVMRGARMRITDVVGKRADLR
ISDRVFGHALRVRGSARPRATGTFISQLRELEPVREMLTSTTVAAVADLPFFFVFCVLFW
FIAGWLVLVPLAACVLLLVPSLLAQPRLRALAQAGMRESSLRNAMLVEAVQGIDDIKVLQ
AEPRFQNQWNHYNAVNADSGLQLRALLNTLSNWTQTVQGGAFAFVVFFGAPLVMDGHMST
GVLVAASILSTRMLAPLAGVTQVLNRWQQAKVAGESLDQLMKLPVDHPPHETRVHRPAVQ
GDYTLRDAVFSHDGQTTALHVKALHIGAGERIAVLGRNGAGKSTLLQALSGLVEPRAGSV
VLDGVSMAHIDPADVRRDVGLLAQDARLFHGTLRENLQMGTPHATDAELITALQATGAWA
FVRRLPTGLDHPLLEGGRGLSGGQRQSLLLARLMLRRPSVLLLDEPTASLDEVAEREVIE
QLRALSAGRTLVLATHRPAVLEAVDRILVVDGGTVVLDGPRDQVMARLRQGAAASRETTA
PAGHGKETQA
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaccaccatgccagagctttctgccgcgcgcggccccgagctgctcgccggt
tgggtcgatgccgtgctggccgtggccgcccactaccacctcgacacctcgcgcgaacgc
atccgcggcgccgccgcatggagcgaccacgaagacatcggcgagcgcgtgcgccagatg
gcccgccaggccgggctcaccgtgcgccaggttgcgccgcgcctggacaccctgagcccc
tggcgcctgcccgtggtgctgcagctgcgcgacgggcaggtggccgtggtcaccgccatc
tcggcgcagggcctgcgcgtgatgctcggtggcgaccagggcgcagaaaccgtctgcacg
atcgacgagctgcaacccgcgctcgaagccatggccgtgctgcggcccgcgcaatcggca
cccgactcgcgcgtcgacgcctacatccgccccgtcgagccgcactggctgcgccagatc
gtgctggccgactggcggccctacgcccacatcctcgtcgcgtcgctggcctacaacctg
atggcgctggccggcaccttgttctcgatgcaggtgtacgaccgcgtcgtgcccgcgcag
tcgctgcccacgctgcatgtgctgttcggcggcgtgctgctgtcgatcgcgttcagctgg
gtcatgcgcggcgcgcgcatgcgcatcaccgacgtggtgggcaagcgcgccgacctgcgc
atttcagaccgcgtgttcggccacgcgctgcgcgtgcgcggctcggcacgcccgcgcgcc
accggcaccttcatctcgcagctgcgcgagctggagcctgtgcgcgaaatgctcacgtcg
acgaccgtggcggccgtggccgacctgccgttcttcttcgtgttctgcgtgctcttctgg
ttcattgccggctggctcgtgctcgtgccgctggccgcgtgcgtgctgctgctcgtgccc
agcctgctggcgcagccgcgcctgcgtgcgctggcccaggcgggcatgcgcgaatcgtcg
ctgcgcaacgccatgctggtcgaggccgtgcagggcatcgacgacatcaaggtgctgcag
gccgagccgcgcttccagaaccagtggaaccactacaacgccgtcaacgccgactcgggc
ctgcaactgcgcgcgctgctcaacaccctgagcaactggacgcagaccgtgcagggcggc
gccttcgccttcgtcgtgttcttcggcgcaccgctggtgatggacggccacatgagcacc
ggcgtgctcgtggccgcgtcgatcttgtcgacccgcatgctcgcgccgctggccggcgtg
acgcaggtgctcaaccgctggcagcaggccaaggtggccggcgagtcgctcgaccagctc
atgaagctcccggtcgaccacccgccccacgagacgcgcgtgcaccggcccgccgtgcag
ggcgactacacgctgcgcgacgccgtcttcagccacgacggccagaccaccgcgctgcac
gtgaaggcactgcacattggcgccggcgaacgcattgccgtgctcgggcgcaacggcgcg
ggcaagtcgacgctgctgcaggcgctgtcgggcctcgtcgaaccgcgtgcgggcagcgtg
gtgctcgacggcgtgtcgatggcccacatcgaccccgccgacgtgcgccgcgacgtcggg
ctgctcgcgcaagacgcgcgcctgttccacggcaccctgcgcgagaacctgcagatgggc
acgccccacgccaccgacgccgaactgatcacggccctgcaagccaccggcgcctgggcc
ttcgtgcgccgcctgcccaccgggctggaccatccgctgctcgaaggcgggcgcggcctt
tcgggcggccagcgccagagcctgctgctcgcgcggctcatgttgcgccgccccagcgtg
ctgctgctcgacgagcccaccgcctcgctcgacgaagtggccgagcgcgaagtgatcgaa
caattgcgcgcgctgtccgcaggccgcacgctggtgctggccacgcaccgcccggccgtg
ctcgaagcggtggaccgcatcctcgtggtggacggcggcaccgtcgtgctcgacggcccg
cgcgaccaggtgatggcgcggctgcgccagggcgcggccgcatcgcgcgagaccacggcc
cccgcaggccatggcaaggagacgcaggcatga
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