Variovorax sp. 38R: IG196_21145
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Entry
IG196_21145 CDS
T10235
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
vav Variovorax sp. 38R
Pathway
vav02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IG196_21145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vav03021
]
IG196_21145
Transcription machinery [BR:
vav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IG196_21145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
HTH_23
TnsD
Sigma70_ECF
HTH_7
HTH_31
LacI
HTH_11
GerE
DUF6975
DUF2774
HTH_24
SASP
Motif
Other DBs
NCBI-ProteinID:
QOF76855
LinkDB
All DBs
Position
complement(4583911..4584414)
Genome browser
AA seq
167 aa
AA seq
DB search
MSAAEAAFQQVHTLYSDHHGWLQSWLRKKLGNSCDAADLAQDTFARLLTARNPEVIAQPR
AYLTSVAKNILVNWYQRQALERAYLEALAVMPEPEAPSPEQRLVILQTLHEIDAMLDALK
PLARRAFLLSQLDGMKYEDIARELGVSLVTVKRYMQQGFRGCLAVMA
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgccgaagccgccttccagcaagtccacaccctctacagcgaccaccatggc
tggctccagtcgtggctgcgcaagaagctcggcaactcgtgtgacgcggccgacctggcg
caggacaccttcgcgcggctgctgacggcgcgcaaccccgaggtcattgcgcagccgcgc
gcctacctcacgagcgtggccaagaacatcctcgtgaactggtaccagcgccaggcgctg
gagcgcgcctacctcgaggcgctggccgtgatgcccgagcccgaggcgccgtcgcccgag
cagcggctggtgatcctgcagacgctgcacgagatcgacgccatgctcgacgccctcaag
ccgctcgcacgccgggccttcctgctgtcgcagctcgacggcatgaagtacgaagacatc
gcgcgcgagctgggcgtgtcgctcgtcacggtcaagcgctacatgcagcagggcttccgc
gggtgcctggcggtgatggcatga
DBGET
integrated database retrieval system
