Variovorax sp. 38R: IG196_22315
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Entry
IG196_22315 CDS
T10235
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vav Variovorax sp. 38R
Pathway
vav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IG196_22315 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vav03019
]
IG196_22315 (pcnB)
Enzymes [BR:
vav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
IG196_22315 (pcnB)
Messenger RNA biogenesis [BR:
vav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IG196_22315 (pcnB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF3010
Motif
Other DBs
NCBI-ProteinID:
QOF77072
UniProt:
A0A7L8SAX4
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All DBs
Position
complement(4828517..4830160)
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AA seq
547 aa
AA seq
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MIKKFIDKLLGKSAGSAQGKSRFGKRQEVPAEVHKIDPALVDERAKNVVTTLQQAGYEAY
VVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFIIGRRFRIVHVVYGRGREHEVIE
VSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVDASGRVLRDNVWGPQEEDAARRDFTV
NAMYYDPANQVVVDYHNGIKDAQKLTLRMIGDPVTRYREDPVRIIRAIRFSAKLAALGFK
MEAKTAAPLIESSKLLADVPQSRMFDEMLKLLQTGHAIATIEQLRKLGLATGIYPLLDVV
VERADQPFVKAALQDTDRRVGEGKPVAPSFLLACVLWADVRDGWAQRQEGRHGQRPQPPF
PALQDAIDDVFNSRIGDVSGRGKLAADMREIWMMQPRFDKRTGSTPYSLVEQARFRAAFD
FMRLRADVGEVGEAIAEWWQEFSTADDLRRQDLLEQVREEQKVRQRVRLRDPVAAPKPRS
EQPARQKQQAEAESDDGDGPDVEADAVPPDGEAAAPRKRKRRRKPRPVGGGSGGGGGSEG
GGSAAGE
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaattcatcgacaagctgctcggcaagtccgccggcagcgcacagggcaag
agccgcttcggcaagcgccaggaggtgccggcagaggttcacaagatcgatcccgccctg
gtcgacgaacgcgcgaagaacgtggtcaccacgctgcagcaagcgggctacgaggcctac
gtggtgggcggcgcggtgcgcgacctgctgctgggcctgcggccgaaagacttcgacgtg
gccaccaacgccacgcccgagcaggtcaagtcgctgttccgccgcgccttcatcatcggc
cggcgctttcgcatcgtgcacgtggtgtacggccggggccgtgagcacgaggtgatcgag
gtctcgaccttccgtgcctacatggacaacgccgccgccgagcaggtggccggcaacgaa
cgcaccagcaagggcgagctcgcgagcatgaagcacgccgtggacgccagcggccgcgtg
ctgcgcgacaacgtctggggcccgcaggaagaagacgcggcgcgccgtgacttcaccgtc
aacgccatgtactacgacccggccaaccaggtcgtggtcgactatcacaacggcatcaag
gacgcccagaagctcacgctgcgcatgatcggcgacccggtcacgcgctaccgcgaagac
ccggtgcgcatcattcgcgccatccgcttctcggccaagctcgccgcgctcggtttcaag
atggaagccaagaccgctgcgccgctcatcgagtcgagcaagctgctggccgacgtgccg
caaagccgcatgttcgacgagatgctcaagctgctgcagaccggccatgccatcgccacg
atcgagcaactgcgcaagctggggctcgccaccggcatctatccgctgctcgacgtggtg
gtggagcgcgccgaccagcccttcgtgaaggccgccctgcaggacaccgaccgccgcgtc
ggcgaaggcaagcccgtggcgcccagcttcctgctggcctgcgtgctgtgggctgatgtg
cgcgacggctgggcccagcgccaggaaggccgccatggccagcgtccgcagccgccgttc
ccggcgctgcaggacgccatcgacgacgtgttcaattcgcgcatcggcgacgtgtcgggc
cgcggcaagctggccgccgacatgcgcgagatctggatgatgcagccgcgcttcgacaag
cgcaccggctccacgccctacagcctggtcgagcaggcgcgctttcgcgccgccttcgac
ttcatgcgcctgcgtgccgacgtgggcgaggtcggtgaggccatcgccgaatggtggcaa
gagttcagcaccgccgacgacctgcgccgccaggacttgctcgagcaggtccgcgaagaa
cagaaggtgcgccagcgcgtgcgcctgcgcgacccggtggctgcacccaagccgcgcagc
gagcaaccggcgcgccagaagcaacaggccgaagccgagtcggacgacggcgacggtccc
gacgtcgaggccgacgccgtgccgccggatggcgaagcggcggccccgcgcaagcgcaag
cgccggcgcaagccgcgcccggtgggcggcggtagcggtggtggtggcggcagcgagggc
ggcgggagcgccgcaggcgaatga
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