Variovorax sp. 38R: IG196_22970
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Entry
IG196_22970 CDS
T10235
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
vav Variovorax sp. 38R
Pathway
vav02020
Two-component system
vav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IG196_22970
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IG196_22970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vav03021
]
IG196_22970
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vav02035
]
IG196_22970
Transcription machinery [BR:
vav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IG196_22970
Bacterial motility proteins [BR:
vav02035
]
Flagellar system
Flagellar assembly proteins
Stator
IG196_22970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
Motif
Other DBs
NCBI-ProteinID:
QOF77196
LinkDB
All DBs
Position
complement(4966008..4966742)
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AA seq
244 aa
AA seq
DB search
MYTAQGTIEKSHLLEQHQPLVRRIALQMMARLPASVELDDLIQAGMLGLLDASSRYQDHR
GAQFETFVSQRIRGAMLDELRASDWGSRGLRQSARGIEKAIQALGHQLGRAPTEGEIAKA
LKVDLETYQSMLQDIQGSQLLYVEDFAKGDPDNPFLDLHAQDARKGRGQFDDPLARLLES
GFRHQLVDAIGELPERDQLLLKLYYEEELNLREIGAVLEVSQSRVCQLHGQAVSRLRAKL
KDAL
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgtacaccgcgcagggcaccatcgagaaatcgcatctgctggagcaacaccagccgctg
gtgcgccgcatcgcgctgcagatgatggcgcgactgccggccagcgtggagctggacgac
ctgattcaggccggcatgctcggcctgctcgatgcgtcgagccgctaccaggaccaccgc
ggcgcgcagttcgagaccttcgtcagccagcgcatccgcggcgccatgctcgacgagctg
cgcgccagcgactggggttcgcgcgggctgcgccagtcggcgcgcggcatcgagaaagcg
atccaggcgctgggccaccagctgggtcgcgcgcccaccgaaggcgagatcgcgaaggcg
ctgaaggtcgacctggagacctaccagtcgatgctgcaggacatccagggaagccagctg
ctgtacgtggaagacttcgccaagggtgacccagacaacccctttctcgacctgcatgcg
caagatgcgcgcaagggacgcggccagttcgacgacccgctggcgcgcctgctggagagc
ggctttcgccaccagttggtcgacgcgattggcgagctgcctgagcgcgaccagctgctg
ctcaagctctactacgaggaagagctgaacctgcgcgagatcggcgcggtgctcgaggtg
agccagtcgcgcgtgtgccagctgcacggccaggcggtgagccggctgcgtgcgaagctc
aaggacgcgttgtag
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