Variovorax sp. 38R: IG196_24105
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Entry
IG196_24105 CDS
T10235
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
vav Variovorax sp. 38R
Pathway
vav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IG196_24105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vav03019
]
IG196_24105
Messenger RNA biogenesis [BR:
vav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IG196_24105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
Nudt16-like
Motif
Other DBs
NCBI-ProteinID:
QOF77407
LinkDB
All DBs
Position
5185653..5186321
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AA seq
222 aa
AA seq
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MLDRDGFRPNVGIILLNQRNQVFWGKRIRTHSWQFPQGGIDRGESPEQAMFRELHEEVGL
HPEHVRIVARTRDWLRYEVPDRFIRRDARGHYKGQKQIWYLLQLVGHDWDLNLRATDHPE
FDAWRWHDYWVPLDVVVEFKRGVYEMALTELARYLPRQDFRNRFLRSNVRAREFERHTLD
HGAPAGLDLPPGGSFDPHPDLPSASDEPPPKNSAPSSFPTPR
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccgggacggcttcaggcccaacgtcggcatcatcctgctcaaccagagaaac
caggttttctggggcaagcgcatacgcacgcattcctggcagtttccgcaaggcggcatc
gaccgtggcgaaagtcccgagcaagccatgttccgggaactgcacgaggaagtcgggctc
cacccggagcatgtgcgcatcgtggcccgtacccgcgactggttgcgctacgaggtgccg
gatcggttcatccgccgtgacgcacggggccactacaaaggccagaagcagatctggtat
ctgctgcaacttgtcggccacgactgggatctcaacctgcgtgccaccgaccatcccgaa
ttcgacgcttggcgctggcatgactactgggtcccgctcgacgtggtcgtcgagttcaag
cgcggcgtctacgagatggcgcttaccgagcttgctcgctacctgccccggcaggatttc
cgcaaccgcttcctgcgcagcaacgtgcgcgcccgagaattcgagcgccacacgctggac
catggagcacctgcgggcctcgacctgccgcccggcggcagcttcgatccgcatcccgac
cttccttctgcgagcgatgaacctcctcccaagaacagcgcgccttcttctttcccgacg
ccacgctga
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