Variovorax sp. 38R: IG196_26725
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Entry
IG196_26725 CDS
T10235
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
vav Variovorax sp. 38R
Pathway
vav00071
Fatty acid degradation
vav00280
Valine, leucine and isoleucine degradation
vav00310
Lysine degradation
vav00362
Benzoate degradation
vav00380
Tryptophan metabolism
vav00410
beta-Alanine metabolism
vav00640
Propanoate metabolism
vav00650
Butanoate metabolism
vav00907
Pinene, camphor and geraniol degradation
vav00930
Caprolactam degradation
vav01100
Metabolic pathways
vav01110
Biosynthesis of secondary metabolites
vav01120
Microbial metabolism in diverse environments
vav01200
Carbon metabolism
vav01212
Fatty acid metabolism
Module
vav_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
IG196_26725 (fadB)
00650 Butanoate metabolism
IG196_26725 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
IG196_26725 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
IG196_26725 (fadB)
00310 Lysine degradation
IG196_26725 (fadB)
00380 Tryptophan metabolism
IG196_26725 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
IG196_26725 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
IG196_26725 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
IG196_26725 (fadB)
00930 Caprolactam degradation
IG196_26725 (fadB)
Enzymes [BR:
vav01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
IG196_26725 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
IG196_26725 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
IG196_26725 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
IG196_26725 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
3HCDH
ECH_1
ECH_2
Motif
Other DBs
NCBI-ProteinID:
QOF77879
LinkDB
All DBs
Position
complement(5761193..5763343)
Genome browser
AA seq
716 aa
AA seq
DB search
MFQGESIEVLPLQDGLVELRFDRRGEAINKLDARTVDEFRQATERIAASPDVRGVLVTSA
KDVFIVGADITEFGATFQQAEADIARGVRASNELFNAFEDLAVPSVVAINGFALGGGLEL
AMLAPLRVMADTAQVGVPEVKLGLFPGFGGTVRLSRLAGLATAIDWVASGKPAKAPAALA
AGVTDEVAAPDALRDRALALLQRAVRGEIDWQAAQQRKRAPLALSAQEAGALVETARTQV
AARSGKHQPAAVIALEMMAEAAGRDRAGALDLESAAFGRVAKTQAAASLVQAFLNDQALK
KLFKRHAREGRPVKQAAVLGAGIMGGGIAYTSALRGTPVRMKDIAQPQLDLGMAEAGKQL
AKQVKNGRLAQEKADAIQASIVPQLDEAGFDTVDCVVEAVVENLEVKRKVLAALEGSVKP
GTVIASNTSSLRIDDIAQPLARPEDFVGMHFFNPVPVMQLVEVIQGAKTSNAAVSTAVGY
AVAMGKTPIVVKDCPGFLVNRILTPYINAFVQLVADGADFEAVDRAMEAFGWPMGPAYLQ
DVVGMDVGAHVGDVIAAGYPQRMPALARNAVKLMVANKRYGQKSGAGFYRYENDPTGRPR
KSAAPEAHALVATLQPQGRRDFADAEIVERMMLPMVVEAAHALEDGVVATPAELDMALLL
GVGFPAYAGGALKYADWLGLDRVVALCDKHAALGAPYVPTARMREMAAQKLRYYPV
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
ttgttccaaggcgaaagtatcgaagtcctgccgttgcaggacgggctggtggagctgcgc
ttcgaccggcgcggcgaggccatcaacaagctcgacgcacgcacggtcgacgagttccgc
caggccaccgaacgcatcgctgcctcgccggatgtgcgcggcgtgctggtgacgagcgcg
aaagacgtgttcatcgtcggcgccgacatcaccgagttcggcgccaccttccagcaggcc
gaggccgacatcgcgcgcggcgtgcgcgccagcaacgagctgttcaacgccttcgaggac
ctggccgtgcccagcgtggtcgccatcaacggcttcgcgctcggcggcgggctggagctg
gcgatgctcgcgccgctgcgcgtgatggccgacacggcccaggtcggcgtgcccgaagtg
aaactgggcctgttccccggcttcggcggcacggtgcggctgtcgcgcctggcaggcctg
gccacggccatcgactgggtggcgagcggcaagccggccaaggcgccggctgcgctggcc
gcgggcgtgaccgacgaggtcgcggcgcccgacgccctgcgcgaccgcgcgctcgcgttg
ctgcaacgtgcggtgcgcggcgagatcgactggcaggccgcgcagcaacgcaagcgcgcg
ccgctggcgctgtcggcgcaagaggcgggtgcgttggtcgagactgcgcgcacgcaggtg
gcggcgcgcagcggcaagcaccagcccgcggccgtcatcgcgctcgaaatgatggccgag
gccgcaggccgcgaccgcgcgggcgcgctcgacctcgagtcggccgccttcggccgcgtc
gcgaagacgcaggccgccgcctcgctggtgcaggccttcctcaacgaccaggcgctcaag
aagctcttcaagcgccatgcgcgcgaaggccgtccggtgaagcaggcggccgtgctcggc
gccggcatcatgggcggcggcatcgcctacaccagcgcactgcgcggcacgccggtgcgc
atgaaggacatcgcgcagccgcagctcgacctgggcatggccgaggccggcaagcagctt
gccaagcaggtgaagaacggccggctcgcgcaggaaaaagccgatgccatccaggcgtcg
atcgtgccgcagctcgacgaggccggcttcgacacggtggactgcgtggtcgaggccgtg
gtcgagaacctcgaggtcaagcgcaaggtgctggccgcgctggaaggcagcgtcaagccc
ggcaccgtgatcgcctcgaacacctcgagcctgcgcatcgacgacatcgcccagccgctc
gcgcgccctgaagactttgtcggcatgcacttcttcaaccccgtgccggtgatgcagctg
gtggaagtgattcagggcgcgaagacgagcaacgcggccgtgtccaccgccgtgggctat
gccgtggcgatgggcaagacgcccatcgtggtgaaggactgcccgggctttctcgtcaac
cgcatcctcacgccgtacatcaacgccttcgtgcagctggtggccgatggcgccgacttc
gaggccgtcgaccgcgcgatggaagccttcggctggcccatgggcccggcctatctgcag
gacgtggtgggcatggacgtgggcgcgcacgtgggcgacgtgattgccgcgggctacccg
cagcgcatgccggccctggcgcgcaatgccgtgaagctgatggtggcgaacaagcgctac
ggccagaagagcggcgccggcttctaccgctacgagaacgaccccacgggccgcccgcgc
aagtccgccgcgcccgaggcgcatgcgctggtcgccacgctgcagccgcagggccggcgc
gacttcgccgatgcggagatcgtcgaacgcatgatgctgccgatggtcgtcgaggctgcg
cacgcgctcgaagacggcgtggtcgccacgccggccgagctcgacatggcgctgctgctc
ggcgtgggcttccccgcctatgccggcggcgcgctcaagtacgccgactggctcgggctg
gaccgcgtcgtggcgctgtgcgacaaacatgcggcgctcggcgcgccgtatgtgccgacg
gcgcgcatgcgcgagatggcagcgcagaagctgcgctactacccggtctga
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