Variovorax sp. 38R: IG196_29105
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Entry
IG196_29105 CDS
T10235
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vav Variovorax sp. 38R
Pathway
vav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IG196_29105 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vav03021
]
IG196_29105 (rpoA)
03400 DNA repair and recombination proteins [BR:
vav03400
]
IG196_29105 (rpoA)
Enzymes [BR:
vav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IG196_29105 (rpoA)
Transcription machinery [BR:
vav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IG196_29105 (rpoA)
DNA repair and recombination proteins [BR:
vav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IG196_29105 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
QOF78307
UniProt:
A0A7L8SEJ3
LinkDB
All DBs
Position
complement(6268906..6269895)
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AA seq
329 aa
AA seq
DB search
MQTTLLKPKTIQVEQLAPNKAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAG
VLHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVLASDIQTPHDVEI
INPDHVIAHLSQGGKLDMQIKVEKGRGYVPGTMRRYADEPTKSIGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLLVEIETNGAISAEDAVRASAKILVEQLAVFAQLEGGELAAFDA
PAPRSAQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSL
NEIKEVLASRGLTLGMKLESWPPAGLDKR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaccctgctgaaacccaagaccatccaggtcgagcaacttgcccccaacaag
gccaaggtcacgctcgaacctttcgagcgcggctacggccacacgctcggcaacgcgctg
cgtcgcgttctgctgtcgtccatggtcggctactcggccaccgaagtcacgatcgctggc
gttctgcatgagtactcgtcgatcgacggcgtgcaggaagatgtcgtcaacatcctgctg
aatctcaagggcgtggtgttcaagctccacaaccgcgacgaagtcacgctgagcctgcgc
aaggacggcgaaggcccggtcctcgcatcggacatccagaccccgcacgacgtcgagatc
atcaaccctgaccacgtgatcgcgcacctctcgcaaggcggcaagctcgacatgcagatc
aaggtcgaaaagggtcgcggctacgtgcccggcacgatgcgccgctatgcggacgagccg
actaagtcgatcggccgtatcgttctggacgcgtcgttctcgcccgtcaagcgcgtgagc
tacaccgtcgaaagcgcccgtgtcgaacagcgtaccgacctggacaagctgctggtcgag
atcgaaaccaacggtgcgatcagcgccgaagatgcggttcgcgcatcggctaaaattctg
gttgaacagctcgccgtgtttgcgcagctcgaaggcggcgaactcgctgcattcgatgca
cccgcaccgcgcagcgcccagcaattcgatccgatcctgctgcgccctgtcgacgaactc
gaactgacggtgcgttcggccaactgcctgaaggccgaaaacatctactacatcggtgac
ctgattcagcgcaccgagaacgagctgctcaagaccccgaacctgggtcgcaagtcgctc
aacgaaatcaaggaagtcctcgcttcgcgcggcctgaccttgggtatgaagcttgaaagc
tggccgccggccggtctcgacaagcgttga
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