KEGG   Variovorax sp. 38R: IG196_29265
Entry
IG196_29265       CDS       T10235                                 
Symbol
tssH
Name
(GenBank) type VI secretion system ATPase TssH
  KO
K11907  type VI secretion system protein VasG
Organism
vav  Variovorax sp. 38R
Pathway
vav03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vav00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    IG196_29265 (tssH)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vav02044]
    IG196_29265 (tssH)
Secretion system [BR:vav02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   IG196_29265 (tssH)
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA AAA_5 ClpB_D2-small Clp_N AAA_16 AAA_22 nSTAND3 AAA_7 Sigma54_activat TniB IstB_IS21 NACHT ATPase_2 ResIII SRP54 AAA_25 SLFN-g3_helicase Zeta_toxin DUF815 T2SSE ARM_KDM8_N NBD_SMAX1 DUF5947 DUF7491
Other DBs
NCBI-ProteinID: QOF78336
UniProt: A0A7L8SEX0
LinkDB
Position
complement(6299362..6302085)
AA seq 907 aa
MSTSLKTLITKLNASARMATQRAANLCLSHGHYEVDLEHLFLALLEQTDNDLARVLHANR
ISASAIQSDLEREIQTFKNGNTRTPVFSQHLQQLFQQAWLLASLDAHAAQIRSGHLLLAL
LTQPDLAQLAQRGSPLFAKIRLEDLKHDFDKLTDGSSEAAEAGASGAAAEGDAQQAPADP
LAAGVPGKTPALDQFTTNLTQRARDGALDPVIGRDTEIRQVIDILMRRRQNNPILTGEAG
VGKTAVVEGLALRIAAQDVPESLRAVALHTLDMGLLQAGASVKGEFENRLKNVIAEVKKS
PHPIVLFIDEAHTMIGAGGQAGQSDAANLLKPALARGELRTIAATTWGEYKKYFEKDAAL
ARRFQVVKVEEPSEALAAAMLRGMVPLMEKHFNIRVLDEAITEAVRLSHRYISGRQLPDK
AVSVLDTACAKVALGQSATPALIEEANRGLERIEAESAALVRDTAAGGRHEARLAELAEQ
KSALQAELAASQQRLAEENALVERIRALRAQRDESAAQPDAAPAVAEKAPARAASRKKTA
AAADPTRDQLDALLTELRALQGSTPMVPLQVDGHVVAEIVSAWTGVPLGRMVKDEIKTVR
ALDTLLAERVIGQDHALAAVAQRVRTASARLEDPNKPRGVFMFVGPSGVGKTETALALAD
ILYGGEKKLITINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRQPYSVVLLDEVE
KAHPDVLEMFFQVFDKGMMDDAEGREIDFRNTLIILTSNIGSSQIMQACLNKADDERPAP
DALADALRPVLMKAFKPAFLGRMKVAPFYPITDAVLEQIIALKLGRIRDRIATNHKAVFE
WDDALVEAVLARCTEVDSGARNVDHILNGTLLPEIAEAVLTRMADETPLAKIKASCGKGG
EFRYRIT
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgagcacctcgctgaagacactgatcaccaagctcaacgccagtgcccgcatggccacg
cagcgcgccgccaacctgtgcctgtcccacggccattacgaggtcgacctggagcacctg
ttcctggcgctgctcgagcagaccgacaacgacctcgcgcgcgtgctgcacgccaaccgc
atcagcgccagcgcgatccagtcggacctggagcgcgagatccagaccttcaagaacggc
aacacgcgcacgccggtgttctcgcagcacctgcagcagctgttccagcaggcgtggctg
ctggcctcgctcgacgcccacgcggcgcagatccgctcgggccacctgctgctcgcgctg
ctcacgcagcccgacctcgcacagctcgcgcagcgcggctcgccgctgttcgcgaagatc
cgcctcgaagacctgaagcacgatttcgacaagctcaccgacggttcgagcgaagcggcg
gaagccggtgcctcgggcgcggcggctgagggcgatgcgcagcaagcgccggccgacccg
ctggccgcgggcgtgcccggcaagacgcccgcgctcgaccagttcaccaccaatctcacg
cagcgcgcgcgcgatggcgcgctcgacccggtgatcggccgcgacaccgagatccgccag
gtcatcgacatcctgatgcgccgtcgccagaacaaccccatcctcacgggcgaggccggt
gtcggcaagacggccgtggtcgaagggctggcactgcgcatcgccgcgcaggacgtgccc
gagtcgctgcgcgccgtggcgctgcacacgctcgacatgggcctcttgcaagccggcgcg
agcgtgaagggcgagttcgagaaccgcctgaagaacgtgattgccgaagtgaagaagagc
ccgcacccgatcgtgctgttcatcgacgaggcccacaccatgatcggcgcgggcggccag
gccgggcagagcgatgcggccaacctgctcaagcctgcgctcgcgcgcggcgagctgcgc
accatcgccgccaccacctggggcgagtacaagaaatacttcgagaaggacgcggcgctc
gcgcggcgcttccaggtcgtgaaggtcgaggaacccagcgaagcgctggccgctgcgatg
ctgcgcggcatggtgccgctgatggagaagcacttcaacatccgcgtgctcgacgaagcc
atcaccgaggccgtgcgcctgtcgcaccgctacatcagcggacggcagctgcccgacaag
gcggtgagcgtgctcgacaccgcgtgcgcgaaagtggcgctggggcagagcgcgacgccg
gcgctgatcgaggaagcgaatcgcggcctcgaacgcatcgaggccgagagcgccgcgctg
gtgcgcgacaccgcggccggcgggcgccatgaagcgcgccttgccgaactggcggaacag
aagagtgcgctgcaggccgagctggctgcgagccagcaacgcctggccgaagagaacgcg
ctggtcgaacgcatccgcgccctgcgtgcgcaacgcgacgaatcggccgcgcagcccgat
gccgcacccgcagtggcagagaaggcgcccgcccgcgccgccagccgcaagaaaaccgct
gctgccgctgaccccacgcgcgaccagctcgatgccctgctcaccgaactgcgcgcactg
caaggcagcacgccgatggtcccgctgcaggtcgacggccacgtcgtcgccgagatcgtc
tccgcctggaccggcgtgccgctgggccgcatggtcaaggacgagatcaagaccgtgcgc
gccctcgacaccctgctcgccgagcgcgtgatcggccaagaccacgcgctggccgccgtg
gcccagcgcgtgcgcactgcgagcgcgcgcctggaagaccccaacaagccgcgcggcgtg
ttcatgttcgtcggcccctcgggcgtcggaaagaccgagaccgcgctcgcgctggccgac
atcctgtacggcggcgagaagaagctcatcacgatcaacatgagcgagtaccaggaggcg
cacagcgtctcgggcctgaagggctcgccgcccggctacgtgggctatggcgaaggcggc
gtgctcaccgaagccgtgcgccgccagccctacagcgtggtgctgctcgacgaggtcgag
aaggcgcaccccgacgtgctcgagatgttcttccaggtgttcgacaagggcatgatggac
gacgccgagggccgcgagatcgacttccgcaacacgctgatcatcctcacctcgaacatc
ggttcgtcgcagatcatgcaggcctgcctcaacaaggccgacgacgagcgccccgcgccc
gacgcactggccgacgcgctgcgccccgtgctcatgaaggccttcaagccggcctttctc
ggccgcatgaaggtggcgccgttctatccgatcaccgatgcggtgctggagcagatcatt
gcgctcaagctcgggcgcatccgcgaccgcatcgcgaccaaccacaaggccgtgttcgag
tgggacgacgcgctggtcgaggccgtgctcgcacgctgcaccgaggtcgactcgggcgcg
cgcaacgtcgaccacatcctcaacggcaccttgctgcccgagattgccgaggccgtgctc
acgcgcatggccgacgagacgccgctcgcgaagatcaaggccagctgcggcaagggcggc
gagttccgctaccggatcacctag

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