KEGG   Variovorax sp. 38R: IG196_29290
Entry
IG196_29290       CDS       T10235                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
vav  Variovorax sp. 38R
Brite
KEGG Orthology (KO) [BR:vav00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vav02044]
    IG196_29290 (tssC)
Secretion system [BR:vav02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   IG196_29290 (tssC)
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: QOF78341
UniProt: A0A7L8SEP1
LinkDB
Position
complement(6306289..6307779)
AA seq 496 aa
MTAQALSASSGAASSEATVDLLDQIVEKSKVAKSDVEHTRTKDLIGELVSQVLEGSVIVS
DNVSAMIDARVADLDALISAQLSAVMHAPEFQKLESTWRGLEYLVKETPTGTMLKIKVIN
ATKRDLIRDFKAAVEFDQSAMFKKVYEEEFGTFGGAPFGALVGDFDVTRQPEDMYFLDQM
AHVAAAAHAPFIGAASPELLGLESFSDLGKPRDMAKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPYHPRDGTVVDSFNFVEDVDGTDHAKYLWCNAAWAFATRLTAAFDDFGWCA
AIRGVEGGGLVEDLPTHTFKTDEGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDY
AAFFGAQSLQKAKKYNTDSANANAVLSAQLQYIFSVSRIAHYLKAMMRDKIGSFASAHNV
EQFLNRWIAQYVLLDDNATQEQKAQFPLREAAIQVGEVPGRPGVYRAVAFLRPHFQLDEL
SISLRLVADLPKSVNK
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgaccgcgcaagcactatcggcatcgagcggtgccgcttcatcggaagccacggtcgac
ctgctcgaccagatcgtcgagaagagcaaggtcgccaagtccgacgtggaacacacgcgc
accaaggacctgatcggcgaactcgtgagccaggtcctcgagggctcggtgatcgtctcc
gacaacgtgtcggccatgatcgacgcccgcgtggccgacctcgacgcgctcatctccgcg
cagctcagcgccgtgatgcacgcgcccgagttccagaagctcgagagcacgtggcgcggc
ctggagtacctggtcaaggaaacgccgaccggcacgatgctcaagatcaaggtcatcaac
gccaccaagcgcgacctgatccgcgacttcaaggccgccgtcgagttcgaccagagcgcg
atgttcaagaaggtctacgaagaagagttcggcaccttcggcggtgcgccgttcggcgcg
ctggtgggcgacttcgacgtcacgcgccagcccgaagacatgtacttcctggaccagatg
gcgcacgtggcggctgccgcccacgcgcccttcatcggcgcggcctcgcccgagctgctg
ggcctggagagcttctccgacctgggcaagccgcgcgacatggccaaggtgttcgacacc
gtcgagtacgccaagtggaagtcgttccgcgattcggaagactcgcgttacgtcggcctc
acgctgccgcgttttctcggccgcctgccctaccacccgcgtgacggcacagtggtcgac
agcttcaacttcgtcgaagacgtcgacggcaccgaccacgccaagtacctctggtgcaac
gccgcctgggccttcgccacgcgcctcacggctgcgttcgacgacttcggctggtgcgcc
gcgatccgcggcgtcgaaggtggaggcctggtcgaagacctgcccacgcacaccttcaag
accgacgaaggcgagatcgccctcaagtgcccgaccgagatcgccatcaccgaccggcgc
gaaaaagagctcagcgacctgggcttcattccgcttgtgcactgcaagaactccgactac
gcggcgttcttcggcgcgcagtcgctgcagaaggccaagaagtacaacaccgacagtgcc
aacgccaacgccgtgttgtcggcgcagctgcagtacatcttctcggtgtcgcgtatcgcg
cactacctcaaggccatgatgcgcgacaagatcggcagctttgcctcggcgcacaacgtc
gaacagttcctgaaccgctggatcgcgcagtacgtgctgctcgacgacaacgcgacgcag
gaacagaaagcccaattcccgctgcgcgaagccgccatccaggtcggcgaagtgcccggg
cggcccggcgtgtaccgcgcggtcgcgttcctgcgcccgcacttccagctggatgaactg
tctatttcactgcgcttggtcgccgatctgccgaagtcagtgaataagtaa

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