Variovorax sp. 38R: IG196_31770
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Entry
IG196_31770 CDS
T10235
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vav Variovorax sp. 38R
Pathway
vav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IG196_31770 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vav03019
]
IG196_31770 (recQ)
03400 DNA repair and recombination proteins [BR:
vav03400
]
IG196_31770 (recQ)
Enzymes [BR:
vav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IG196_31770 (recQ)
Messenger RNA biogenesis [BR:
vav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IG196_31770 (recQ)
DNA repair and recombination proteins [BR:
vav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IG196_31770 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
QOF78795
UniProt:
A0A7L8SH50
LinkDB
All DBs
Position
complement(6828520..6830430)
Genome browser
AA seq
636 aa
AA seq
DB search
MSSLAPRPFDASSDGSSSGSAAPADILHDVFGYARFRGAQQDIVEHVVGGGDALVLMPTG
GGKSLCYQIPAIARQRAGRGVSVVVSPLIALMHDQVGALHEAGVNAAFLNSTLDWEQTQD
VERRMLRGEITLLYAAPERVNTPRFLSQLDSLNERGKLSLFAIDEAHCVSQWGHDFRPEY
RALTVLHERYPGVPRIALTATADDLTRADIVERLQLEQARQFVSSFDRPNIRYTIVEKKD
ATTQLLRFIEREHEGDAGVVYCQSRKRVEDLATTLKGAGINALPYHAGLDAAVRQKHQDR
FLREEGIVMVATIAFGMGIDKPDVRFVGHVDMPKNIEGYYQETGRAGRDGAPADAWMAYG
LNDVVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLLGYFGEQSTPCGNCD
NCLNPPQVWDGTDAARKLLSTIYRVQQQSGISFGAGHIMDILRGKATEKVKQFGHERIST
FGIGAEFSEVALRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVLKGEATVSLRESVSSP
AERKPRREKVAKGAPSPAAASLDDTGKKRFEALKAWRAEVAKEHNLPAYVIFHDATLAAI
AERAPATLEDLQGISGIGTKKLEAYGAEVLRVCEAF
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttccctcgctccccgccccttcgacgcgtccagcgacggcagcagctccggcagc
gcggcccccgccgacatccttcacgacgtgttcggctacgcccggttccgcggggcccag
caggacatcgtggagcacgtggtgggcggcggcgatgcgctggtgctcatgcccacgggc
ggcggcaagtcgctctgctatcagatcccggccattgcgcggcagcgcgcggggcgcggc
gtgtcggtggtggtgtcgccgctcatcgcgctgatgcacgaccaggtgggcgcgctgcac
gaagcgggcgtgaacgcggccttcctgaactccacgctcgactgggaacagacgcaggac
gtggagcgccgcatgctgcgcggcgagatcacgctgctgtacgcggcgcccgagcgggtg
aacacgccgcgctttctgtcgcagctcgattcgctgaacgagcgcggcaagctctcgctg
ttcgccatcgacgaggcgcattgcgtgagccagtggggccacgacttccgccccgagtac
cgcgcgctcaccgtgctgcacgagcgctacccgggcgtgccgcgcatcgcgctcacggcc
acggccgacgacctcacgcgcgccgacatcgtcgagcggctgcagctcgagcaagcgcgc
cagttcgtctccagcttcgatcgtccgaacatccgctacaccatcgtcgagaagaaagac
gccaccacgcagctgctgcgcttcatcgagcgcgagcacgagggcgatgcgggcgtggtc
tattgccagtcgcgcaagcgcgtggaagacctcgcgacgacgctgaagggtgccggcatc
aatgcgctgccgtaccacgcgggcctggacgccgcggtgcgccagaagcaccaggaccgc
ttcctgcgcgaagaaggcatcgtgatggtcgcgaccatcgccttcggcatgggcatcgac
aagcccgacgtgcgcttcgtcggccacgtcgacatgcccaagaacatcgagggctactac
caggaaaccggccgcgcgggccgcgacggcgcccccgccgacgcctggatggcctacggc
ctgaacgacgtggtgaaccagcgccgcatgatcgacgagagcccggccggcgaagagttc
aagcaggtgatgcgcggcaagctcgacgccctgctgtcactggccgaggccagcgactgc
cggcgcgtgcgcctgctgggctacttcggcgagcagagcacgccctgcggcaactgcgac
aactgcctgaacccgccgcaggtgtgggacggcaccgatgccgcgcgcaagctgctgagc
accatctaccgcgtgcagcagcagagcggcatcagcttcggcgcgggccacatcatggac
atcctgcgcggcaaggcgaccgagaaggtcaagcagttcgggcacgagcgcatcagcacc
ttcggcatcggcgcggagttcagcgaggtggcgctgcgcggcgtgctgcgccagctgatc
gccacgggcgcgctggcggtcgatgccgaagcgttcaacacgctgaagctcaccgagggc
tcgcgcgcggtgctcaagggcgaggccacggtgtcgctgcgcgagtcggtgtcgtcaccg
gccgagcgcaagccccggcgcgagaaggtcgccaagggcgcaccgtcgccggcggccgcc
tcgctggacgacaccggcaagaagcgcttcgaggcgctcaaggcctggcgcgccgaggtg
gcgaaggaacacaacctgccggcctacgtgatcttccacgacgccacgctggccgccatt
gccgagcgcgcgcccgcgacgctcgaagacctgcagggcatcagcggcatcggcacgaag
aagctcgaggcctacggcgccgaggtgcttcgcgtgtgcgaagccttctga
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