Variovorax sp. W6: SFB74_02170
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Entry
SFB74_02170 CDS
T11181
Name
(GenBank) ABC transporter substrate-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
vaw Variovorax sp. W6
Pathway
vaw02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SFB74_02170
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vaw02000
]
SFB74_02170
Transporters [BR:
vaw02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
SFB74_02170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_6
SBP_bac_11
SBP_bac_1
Motif
Other DBs
NCBI-ProteinID:
XVK59352
LinkDB
All DBs
Position
complement(503935..504984)
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AA seq
349 aa
AA seq
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MSPKSTIRTLPLLAALLAAAGIAGAQTKTLYIGMNGGTMEKAYTQYVFPAFEKAYGAKVV
VVPGTSSDILAKAQANKDRPQIHVMFLDDGVMVRAIGMGLCQKQKPSQSLSEIYPAARFK
DDMASGVSLGMTGLAYNAKMFKEKGWAAPTSWMDLADPKYKGKVVFQSMSSSSFGLHGFL
MFNRIQGGNDKNVEPGFKAWPTSIGPNVLEYIPSSAKLSEMVQTGEAAIFPLTPTAVAAM
KSKGIPVEYAPPKEGAVVLMVGQCVIANNTEPELSQKLAEFLLSPLAQANVLQYGAQIPT
NPKAPVVGDGVAQVADINKWMKTAVTIDWESINANRPAWNARWNKTIEK
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtccccgaagtccacgatcagaaccctcccgctcctggccgcgctgctcgcggccgcc
ggcatcgccggtgcgcagaccaagaccctctacatcggcatgaacggcggcacgatggag
aaggcgtatacgcagtacgtcttccccgccttcgagaaggcctacggcgcgaaggtggtg
gtggtgcccggcacttcctccgacatcctcgcgaaggcgcaggccaacaaggacaggccg
cagatacacgtgatgttcctcgacgacggcgtgatggttcgcgccatcggcatgggcctg
tgccagaagcagaagcccagccagtcgctctccgagatctacccggccgcgcgcttcaag
gacgacatggccagcggcgtgagcctgggcatgacgggcctggcctacaacgccaagatg
ttcaaggagaagggctgggccgcgcccacctcgtggatggacctggccgacccgaagtac
aagggcaaggtggtgttccagtcgatgtcgtcgtcttccttcgggctgcacggcttcctg
atgttcaaccgcatccagggcggcaacgacaagaacgtggagcccggcttcaaggcctgg
cccacctccatcgggccgaacgtgctggagtacatcccgagctcggccaagctctcggag
atggtgcagaccggcgaggcggcgatcttcccgctgacgcccacggccgtggcggcgatg
aagagcaagggcatcccggtcgagtacgcgccgcccaaggaaggcgcggtggtgctcatg
gtgggccagtgcgtgatcgccaacaacaccgagcccgagctgtcgcagaagctcgccgag
ttcctgctgagcccgctggctcaagccaacgtgctgcagtacggcgcccagatcccgacc
aacccgaaggcgccggtggtgggcgacggcgtggcgcaggtggccgacatcaacaagtgg
atgaagacggccgtgaccatcgactgggaaagcatcaacgcgaaccgcccggcttggaac
gcgcgctggaacaagacgatagagaagtga
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