Variovorax sp. W6: SFB74_04465
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Entry
SFB74_04465 CDS
T11181
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vaw Variovorax sp. W6
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vaw03016
]
SFB74_04465
Enzymes [BR:
vaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SFB74_04465
Transfer RNA biogenesis [BR:
vaw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SFB74_04465
Prokaryotic type
tRNA splicing ligases
SFB74_04465
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PDZ_6
Motif
Other DBs
NCBI-ProteinID:
XVK59787
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All DBs
Position
1051736..1053142
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AA seq
468 aa
AA seq
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MSDLRFSRLQRAFSRAGIAVDYCDGVYHLRHEASQATVLLPPSLPLEEKAVNQLLAFASV
RSPDGERGVCKACATPDFHPGSVAPVGSVVATDADFVIPAAVGTDINCGMRLLTTGLTLD
QVAPHKTRLVERLTRSLLDSGRDVPVHTAAFRALFDVGPSAFLEAVQDGGLWSACDRDRM
QAELDACIGLATFGGSARHAPEAYTGVRHEVFRDPCLGTPGSGNHFVELQVVDHVMDRHE
AYRAGLKAGDVVVMIHSGSRDIGFHVGGRWMDRARSEWPKGLRHPRSGLYGLTGPLADEY
LEAMGVAARYAWANRVVLAELVRKDFADLLGATSSRLVVDVPHNVVLREHGMNIHRKGAT
PANAGDLALIPGSMGDYSYLVAGLGHEDWLWSCSHGAGRRMRRQQVRAMRPAPVDVQASW
QCVTLREERRIEEAPQAYKPIGEVIDAQERAGLIHCAVRLRPWITFKA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccttcgtttctccagacttcagcgcgccttttcgcgcgctggcattgccgtc
gactactgcgacggcgtttatcacctccgccatgaggcctcgcaggccacggtgctcctg
ccgcccagtcttccgctggaagaaaaggcggtgaatcagttgctggcttttgccagcgtg
cgctcgcccgacggcgagcggggcgtgtgcaaggcctgtgcgacacccgacttccatccg
ggttctgtcgcacctgtcggcagcgttgtcgcgaccgatgccgactttgtcattcctgca
gcggtgggtaccgacatcaactgcggcatgcggctgctgaccaccgggctcacgctcgac
caggtggcgccgcacaagacgcggctggtcgagaggctcacgcgcagcctgctcgacagc
gggcgcgacgtgccggtgcacacggcggcattcagggcgctgttcgatgtggggccgtcg
gcattcctcgaagcggtacaggacggcgggctatggtcggcgtgcgaccgcgaccggatg
caggccgaactcgatgcctgcatcggcctggcgacgttcggcggcagcgcgcggcatgcg
cccgaggcctacaccggcgtccgccatgaggtgtttcgtgacccctgcctcggcacgccg
ggcagcggcaatcacttcgtggaactgcaagttgtcgaccatgtgatggaccgtcacgag
gcctatcgcgccggcctgaaggcaggggacgtggtcgtgatgatccacagcggctcgcgc
gacatcgggttccatgtgggcggccgctggatggaccgtgcccgcagcgaatggcccaag
ggcctgcgtcatccgagaagcggcctgtatggcctgacgggaccgctggccgacgaatat
ctggaggccatgggcgtggcggcgcgctacgcatgggcaaaccgggtcgtcctggccgaa
ctggtacgcaaggatttcgcggatttgctgggtgccacgtcgtcgagactagtcgtggac
gtgccgcacaacgtcgtgctgcgggaacatggcatgaacatccaccggaagggagcgacg
ccggcgaatgcgggcgatctggcgctgattcccggctcgatgggcgactactcttatctg
gtggccggactggggcacgaagactggctctggtcgtgcagccatggcgctggccggcgg
atgcgccggcagcaggtacgcgcgatgcggccggcgcccgtcgacgtgcaggcaagctgg
cagtgcgtgaccttgcgggaggagcgccggatcgaggaagcgccgcaggcctacaagccc
atcggcgaggtgatcgacgcgcaggagcgtgcgggcctgatccactgtgcggtgcggctc
aggccctggatcacgttcaaggcgtga
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