Variovorax sp. W6: SFB74_05270
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Entry
SFB74_05270 CDS
T11181
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
vaw Variovorax sp. W6
Pathway
vaw00300
Lysine biosynthesis
vaw00470
D-Amino acid metabolism
vaw01100
Metabolic pathways
vaw01110
Biosynthesis of secondary metabolites
vaw01120
Microbial metabolism in diverse environments
vaw01230
Biosynthesis of amino acids
Module
vaw_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SFB74_05270 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SFB74_05270 (dapF)
Enzymes [BR:
vaw01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
SFB74_05270 (dapF)
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Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
XVK59939
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Position
1220024..1220899
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AA seq
291 aa
AA seq
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MRIRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGIDF
QYVIHNSDGGEVEQCGNGARCFMRFVSEHHLTEKKQVRVQTLSGVIEPRMGGDGRVTVDM
GAPIFEPARVPFDPAGLDPQPEGGWHKWHLALGTRAGSAIVSVAVLSMGNPHAVQVVDNV
DTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSNIRLRVFERGAGETLACGTGACAAVVA
GIRLGLLERRVDVQTHGGVLTIEWQGEGQPVLMTGPAVTVFEGDIEVPELP
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatccgctttaccaagatgcagggagccggcaacgatttcgtcgtgctggacgaa
acgcgcggcacgctgggcctcagcgccgcgcaataccgctttctggccgaccgccacttc
ggcgtcggcgccgaccagatcctcacggtgcggccttcgcctgccgagggcatcgacttc
cagtacgtgatccacaactccgacggcggcgaggtggagcagtgcggcaacggcgcgcgc
tgcttcatgcgcttcgtgagcgaacaccacctgaccgagaagaagcaggtgcgtgtgcag
accctctccggcgtcatcgaaccccgcatgggcggcgacggccgcgtgacggtcgacatg
ggcgcccccattttcgaacccgcgcgcgtgcccttcgaccccgccgggctcgatccgcag
cccgaaggcggctggcacaagtggcacctggcgctgggcacccgcgccggcagcgctatc
gtttcagtagctgtgctctcgatgggcaacccgcacgccgtgcaggtggtggacaacgtc
gacaccgccccggtggccgagcagggcccgcagatcgagcaccacccgcgttttccgcag
cgggtgaatgccgggttcatgcaggttgtcgatcgttccaacatcaggctgcgggtgttc
gagcgcggcgccggcgaaacgctggcctgcggcaccggtgcctgcgcggcggtggtggcg
ggcatccgcctcgggctgctggagcgccgcgtggatgtgcagacgcacggcggcgtgctg
acgatcgagtggcagggggagggccagccggtgctgatgaccgggccggccgtcacggtc
ttcgagggagacatcgaggtgccggagctgccatga
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