Variovorax sp. W6: SFB74_08075
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Entry
SFB74_08075 CDS
T11181
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vaw Variovorax sp. W6
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaw03032
]
SFB74_08075
03400 DNA repair and recombination proteins [BR:
vaw03400
]
SFB74_08075
Enzymes [BR:
vaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SFB74_08075
DNA replication proteins [BR:
vaw03032
]
Prokaryotic type
DNA Topoisomerases
SFB74_08075
DNA repair and recombination proteins [BR:
vaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SFB74_08075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
XVK60481
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Position
complement(1866804..1868045)
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AA seq
413 aa
AA seq
DB search
MPASSPPSSSPSPAKPPSRPTPISNGLVYVNPDMPGIRRLKHGERFRYRDARGRWVRDTD
ELSRIRMLAIPPAYTQVWICPLPNGHLQATGIDARGRKQYRYHADWRSMQDETKFERLEA
FALALPGIRARVARDLQLPPGSKAPGRAQVLAALVRLLDTTLLRVGNEEYASSNGSFGLT
TLRNRHAAVKGQALRLRFRGKSGVMHEAQLDDPRVAKVVRQCQQLPGQALFQYVDAGDES
NDEKSELRGVSSTDVNDYLAEAAGGEHFTAKDFRTWHGTVQALELTRLACEPGRTAADGS
RYSAKDILGAVAKQLGNTPAVCRKAYVHPAVLALGSALSDGDEATAALFEKIGGSRTARP
SRGLYAAERRLLSFLKAHRREQRRTATAAGRKGKTQVRVASTRRTLAASSATA
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgccggcctcttcccctccttcctcttcgccctcacccgccaagcctccatccaggccg
acgcccatctccaacggcctggtctacgtgaaccccgacatgcccggcatccgccgcctg
aagcacggcgagcgcttccgctaccgcgatgcccgcggcaggtgggtgcgcgacacggac
gagctctcgcgcatccgcatgctggccattccgccggcctacacgcaggtgtggatctgc
ccgctgcccaacggccacctgcaggccaccggcatcgacgcgcgcgggcgcaagcagtac
cgctaccacgccgactggcgctcgatgcaggacgagaccaagttcgaacgcctcgaggcc
ttcgcgctcgcgctgccgggcatccgcgcccgcgtggcgcgcgacctgcaactgcctccg
ggcagcaaggcgccgggccgtgcccaggtgctcgcggcgctggtgcggctgctcgacacc
acgctgctgcgcgtgggcaacgaggaatacgcgagcagcaacggctccttcggcctcacc
acgctgcgcaaccggcacgcggccgtgaagggccaggcgctcaggctgcgcttccgcggc
aagagcggcgtgatgcacgaagcgcagctcgacgatccgcgcgtggcgaaggtggtgcgg
caatgccagcagctgccggggcaggcgctcttccagtacgtcgatgccggcgacgaaagc
aacgatgaaaaaagcgaactgcgcggcgtctcgtccaccgacgtgaacgactacctggcc
gaagccgccggcggcgagcacttcaccgcaaaggacttccggacctggcacggcacagta
caggcgctggaactcacccggctggcctgcgaacccggccgcaccgccgccgacggcagc
cgctacagcgccaaggacatcctgggcgccgtggcgaagcagctgggcaacacgccggcg
gtctgcaggaaggcctacgtgcacccggccgtgctggcgctgggcagcgcgctgtcggac
ggcgacgaggccaccgccgcgctgttcgagaagatcggcggcagccgcaccgcgaggccc
tcgcgcgggctgtatgcggcggaacgccggctgctgtcattcctgaaggcgcaccggcgc
gagcagcgacgcaccgccacggccgccggcagaaagggaaagactcaggtccgcgtggcg
agcaccaggcgcacgctggcggcgtcgagcgccaccgcgtag
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