Variovorax xiamenensis: SFB74_09460
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Entry
SFB74_09460 CDS
T11181
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vaw Variovorax xiamenensis
Pathway
vaw03420
Nucleotide excision repair
vaw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SFB74_09460
03430 Mismatch repair
SFB74_09460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaw03400
]
SFB74_09460
Enzymes [BR:
vaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFB74_09460
DNA repair and recombination proteins [BR:
vaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFB74_09460
MMR (mismatch excision repair)
Other MMR factors
SFB74_09460
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XVK60747
LinkDB
All DBs
Position
2154502..2156931
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AA seq
809 aa
AA seq
DB search
MLFNDPAADDGHSPALPLLQNLNAEQLAAVTLPEGNALILAGAGSGKTRVLTTRIAWLLQ
TGQVSAGGILAVTFTNKAAKEMMTRLTAMLPVNVRGMWIGTFHGLCNRLLRAHWKLANLP
STFQILDTQDQLSAIKRLMKQFNVDDERFPAKQTQWFIAGAKEDGLRPDAIEVRSDDDRK
KVELYRLYEEQCQREGVVDFGELMLRSYELLRDNEPVREHYQRRFRHILIDEFQDTNRLQ
YAWIKMLAGNTVEGRFVPGQHNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVRHQIKL
EQNYRSYSNILDSANELIGHNKKRLGKNLRTDQGPGEPVRVYESPTDLAEAQWMVEEMRQ
LVRDGYERKEMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLE
NKDDDTSFLRVVNFPPRGIGARTLETLQDAARAANRSLHDAVSVVGGKAGANLTGFVAKI
DVLREQTQGVSLREIIELVLDHSGLVEHYRADREGADRIENLEELVNAAESFVTQEGFGR
DAVALPVDELRQSPASQGLDPNRPVLDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQ
AGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRARK
RLYLSHSQTRMLHGQTRYNVKSRFFDELPEGALKWLTPKNQGFAPSAFGYGGGYGSTRGG
AGGYGGGYGGGSGGGGGRDKDTFASPPVPPQKTAPSHGLRSGMQVFHNKFGEGTVTALEG
TGDDARAQVKFARHGVKWLALSVAKLTPI
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttaacgatcccgcggctgacgatggccattccccggcgctgccgctgctccag
aacctgaacgcggagcaactcgccgcggtcacgttgcccgaaggcaacgctctcatcctg
gcaggcgccggctccggcaagacgcgcgtgctcaccacccgcatcgcctggctgctgcag
acgggccaggtctccgcgggcggcatcctcgccgtgaccttcaccaacaaggccgcgaag
gaaatgatgacgcgcctgacggcgatgctgcccgtcaacgtgcgcggcatgtggatcggc
accttccacggcctgtgcaaccgcctgctgcgcgcgcactggaagctggcgaacctgccc
tctaccttccagatcctcgacacgcaggaccagctctcggccatcaagcgcctgatgaag
cagttcaacgtcgacgacgagcgcttcccggccaagcagacccagtggttcatcgccggc
gccaaggaagacggcctgcggcctgacgccatcgaggtgcgcagcgacgacgaccgcaag
aaggtcgagctctaccgcctgtacgaagagcagtgccagcgcgaaggcgtggtcgacttc
ggcgagctcatgctgcgcagctacgaactgctgcgcgacaacgagccggtgcgcgagcac
taccagcggcgcttccgccacatcctgatcgacgagttccaggacaccaaccgcctgcag
tacgcgtggatcaagatgctcgccggcaataccgtcgagggtcgcttcgtgcccggccag
cacaacagcgtgatcgccgtgggcgacgacgaccagagcatctacgccttccgcggcgcg
cgcgtgggcaacatgaccgacttcgtgcgcgagttcgacgtgcgccaccagatcaagctg
gagcagaactaccgcagctacagcaacatcctcgactccgccaacgaactcatcggccac
aacaagaagcgcctgggcaagaacctgcgcaccgaccaggggccgggcgagcccgtgcgc
gtgtacgagtcgcctaccgacctggccgaagcccagtggatggtcgaggaaatgcgccag
ctcgtgcgagacggctacgagcgcaaggaaatggccgtgctctaccgcagcaatgcgcag
agccgggtgatcgaaacggcgctcttcaatgcctccgtgccgtaccgtgtgtacggcgga
ttgcgcttcttcgagcgcgccgaaatcaagcacgcgctggcctacttgcgcctgctcgag
aacaaggacgacgacaccagcttcctgcgcgtcgtcaacttcccgccgcgcggcatcggt
gcgcgcacgctggaaaccctgcaggacgccgcgcgcgcagccaaccgttcgctgcacgac
gcggtgagcgtggtcggcggcaaggccggcgccaacctcacgggcttcgtcgccaagatc
gacgtgctgcgcgagcagacccagggcgtgagcctgcgcgagatcatcgaactggtgctc
gaccacagcggcctcgtcgagcactacagggccgaccgcgaaggcgccgaccgcatcgag
aatctggaagaactcgtgaacgcggccgagagcttcgtcacgcaggaaggcttcggccgc
gacgctgtggcgctgcctgtcgacgaactgcgccagtcccccgcgagccaagggctcgac
ccgaaccgcccggtgctcgacgagccgctcgcgcccgatgccgaaacgggcgaaacgctg
agcccgctggccgccttcctcacgcatgccgcgctcgaatcgggcgacaaccaggcgcag
gcggggcaggacgcggtgcagctcatgacggtgcacgccgccaagggcctggagttcgac
tgcgtgttcatcaccggcatggaagagggcctgttcccgcacgagaactcgatgagcgac
ttcgagagcctcgaggaagagcgccgcctgatgtacgtggcgatcacgcgcgcccgcaag
cgcctgtacctgagccactcgcagacccgcatgctgcacggccagacccgctacaacgtc
aagagccgcttcttcgacgaactgcccgaaggcgccctgaaatggctcacgccgaagaac
cagggctttgcgccctcggcctttggctacggtggcggctacggaagcacgcgcggtggt
gccggcggttacggtgggggctatggcggcggttcaggaggcggcggtggccgcgacaag
gacaccttcgccagcccgcccgtgccgccacagaagacggcgccctcgcacggcctgcgc
tcgggcatgcaggtgtttcacaacaagttcggagaaggcaccgtgaccgcgctggaaggc
accggggacgatgcgcgcgcccaggtcaagttcgcgcgtcatggcgtgaagtggctggcg
ctgtcggtggccaagctcacgccgatctga
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