Variovorax sp. W6: SFB74_09480
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Entry
SFB74_09480 CDS
T11181
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vaw Variovorax sp. W6
Pathway
vaw03030
DNA replication
vaw03410
Base excision repair
vaw03420
Nucleotide excision repair
vaw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFB74_09480 (polA)
03410 Base excision repair
SFB74_09480 (polA)
03420 Nucleotide excision repair
SFB74_09480 (polA)
03440 Homologous recombination
SFB74_09480 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaw03032
]
SFB74_09480 (polA)
03400 DNA repair and recombination proteins [BR:
vaw03400
]
SFB74_09480 (polA)
Enzymes [BR:
vaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SFB74_09480 (polA)
DNA replication proteins [BR:
vaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFB74_09480 (polA)
DNA repair and recombination proteins [BR:
vaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SFB74_09480 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFB74_09480 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
XVK60751
LinkDB
All DBs
Position
2159423..2162242
Genome browser
AA seq
939 aa
AA seq
DB search
MTDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYA
ACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLSVPDVEADDVI
GTLARVAASQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKRRDVAGVTAEFGVPPGLMID
YQTLVGDSVDNVPGVPKVGPKTAAKWLLEYGSLDALLERAAEVKGAAGENLRQAMEQLPL
SRRLVTIRTDCDLDGHVTGLPSLEGLPVGAPQTAELKPFYEKFGFKSLVKALEAQAVPPE
LIEESLKKKAASAGAGTDQGGLFDEPSDMQALEAASPASNLKYDTIMSWEQFDAWLAKLE
AAELAAIDTETTSLDEMVAQIVGVSFSVTPGEAAYIPLTHNYPDAPQQLPIDEVLAKLKP
WLENGAKKKLGQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLEVHKPHGLSSLAERHLGR
SGISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHNTLWPRLQADEKLSFIYQL
EMDSSEALYRVERNGVMIDSPTLAAQSHELGKRIMELEQEAYEIAGQPFNLGSPKQIGEI
FFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRSLSKLKGTYTDKLGQLAN
PRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQI
ELRIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMS
SFGLAKNLGIENKAAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEIN
SPNGPRRGGAERAAINAPMQGTAADLIKLSMVKVQNVLDEEKRATRMIMQVHDELVFEVP
EAEVEWVRTEIPRIMAGVASLKVPLLAEIGVGPNWDKAH
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaagaaaacgctgctgctcgtggatggctcgagctacctctaccgcgccttc
cacgccatgcccgacctgcgggccgtgcccggcgacccgaagagcccggcgaccggcgcc
atccgcggaatgatcaacatgatgaccgcgctgcgccgcgaggtgcgcgcggactacgca
gcctgcatcttcgacgcgcccggcaagaccttccgcgacgactggtaccccgaatacaag
gccaaccgctcgccgatgcccgacgacctgcgcagccagatcgaccccatccacgaagtg
gtgaagctgctcggctggcccgtgctcagcgtgcccgacgtggaggccgacgacgtcatc
ggcacgctcgccagggtggcggcctcgcagggcgtggaggtcatcgtctccagcggcgac
aaggacctgagccagctggtcgacgagcacatcaccatcatcgacacgatgaacggcaag
cggcgcgacgtggccggggtcacggccgagttcggcgtgccgcccggcctgatgatcgac
taccagacgctggtgggcgactcggtcgacaacgtgcccggcgttccgaaggtcggcccc
aagacggccgccaagtggctgctcgaatacggttcgctcgacgcgctgctggaacgcgcg
gccgaagtgaagggcgccgcgggcgagaacctgcgccaggccatggaacagctgccgctg
agccggcgcctcgtgaccatccgcaccgactgcgatctcgacggccacgtcaccggcctg
ccctcgctcgaaggcctgccggtaggtgcgccgcaaacggccgaactcaagccgttctac
gagaagttcgggttcaagagcctggtcaaggcgctcgaggcgcaggccgtgccgcccgag
ctgatcgaggagagcctgaagaagaaggcggcttccgcgggcgccggcaccgaccagggc
ggcctgttcgacgagccctccgacatgcaggcgcttgaagccgcttcgcccgcgagcaac
ctgaagtacgacacgatcatgagctgggagcagttcgacgcctggctcgcgaagctcgag
gcggccgagctcgccgcgatcgacacagagaccacctcgctcgacgagatggtcgcgcag
atcgtcggcgtcagcttcagcgtcacgcccggcgaggccgcctacatcccgctcacgcac
aactatcccgatgcgccccagcagttgcccatcgacgaagtgctggcgaagctcaagccc
tggctcgagaacggcgcgaaaaagaagctcggccagcacatcaagtacgaccggcacgtg
ttcgccaaccacggcatcgaggtgcagggctacgcgcacgacaccatgctgcagagctac
gtgctcgaggtgcacaagccgcacggcctctccagcctggcagaacgccacctgggccgc
agcggcatctcgtacgaggacctgtgcggcaagggtgcgcaccagatcccgttcagccag
gtcgacatcgcgaaagccgccgaatactcgtgcgaggacagcgaccagaccctcgacgtg
cacaacaccctgtggccgcgcctgcaggccgacgagaagctgagcttcatctaccagctc
gagatggattcgagcgaggcgctctaccgcgtggagcgcaacggcgtgatgatcgacagc
cccacgctggctgcgcagagccacgaactcggcaagcgcatcatggagctggagcaggag
gcctacgaaatcgccggccagcccttcaacctcggttcgcccaaacagatcggcgagatt
ttcttcaccaagctgggcctgcccgtggtcaagaagacgccgagcggcgcgcccagcacc
gacgaagaggtgctcgagaagctggcggaagactatccgctgccggccaagatcctcgag
caccgcagcctgtcgaagctcaagggcacctacaccgacaagctcggccagctcgccaac
ccgcgcaccggacgcgtgcacacgcactacgcgcaggccgtggccgtcaccggccggctg
tcgagcaacgacccgaacctgcagaacatcccgatccgcacgcccgaaggccggcgcgtg
cgcgaggccttcgtggcgccggcgggcagcgtgatcgccagcgccgactactcgcagatc
gagctgcgcatcatggcccacatcagcggcgacgagtcgctgctgcgcgcattcaccgag
ggcatcgacgtgcaccgcgccacggccgccgaggtgttcggctccacgcccgaccaggtg
tcgagcgagcagcgccgctacgccaaggtcatcaacttcggcctgatctacggcatgagc
agcttcggcctggcaaagaacctcggcatcgagaacaaggccgcggcctcgtacatcgag
cgctacttcgcgcgctacccgggcgtgaaggcctacatggacgagaccaaggcgctcgcc
aaggagcagggctacgtcgagaccgtgttcggccggcgcctgtacctgcccgagatcaat
tcgcccaacggcccgcgccgcggcggcgccgagcgcgcggccatcaatgcgccgatgcag
ggcacggcggccgacctcatcaagctcagcatggtgaaggtacagaacgtgcttgacgag
gagaagcgcgccacccggatgatcatgcaggtgcacgacgaactggtgttcgaggtgccc
gaggccgaggtcgaatgggtgcgcaccgagatcccgcgcatcatggccggcgttgcctcg
ctgaaggtgccgctgctggccgagatcggcgtcgggcccaactgggacaaggcgcactga
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