Variovorax sp. W6: SFB74_12020
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Entry
SFB74_12020 CDS
T11181
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vaw Variovorax sp. W6
Pathway
vaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFB74_12020 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaw03019
]
SFB74_12020 (pnp)
03016 Transfer RNA biogenesis [BR:
vaw03016
]
SFB74_12020 (pnp)
Enzymes [BR:
vaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SFB74_12020 (pnp)
Messenger RNA biogenesis [BR:
vaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SFB74_12020 (pnp)
Transfer RNA biogenesis [BR:
vaw03016
]
Prokaryotic type
tRNA degradation factors
SFB74_12020 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
Methyltransf_3
OB_RRP5_4th
KH_SLS1_2
DUF5813
KH_PNO1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
XVK61240
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All DBs
Position
2712052..2714373
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AA seq
773 aa
AA seq
DB search
MSLFNKVTKSFQWGGKTVVMETGEIARQASGAVLVDIEGTVILATVVASKSAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTI
SLNPEVDADIAAMIGVSAALSISGVPFNGPIGAARVGYINGQYVLNPGQTARKDSQMDLV
VAGTQAAVLMVESEALQLSEEIMLGGVVFGHEQANIAIDAIHELVRDAGKPVWDWKAPAE
DEAFVAKVKGLAEDKLRAVYQIRSKQARTQALREANASVLEALKAEGTEFDSGKVSDLLF
AIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGT
ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPNK
EEFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKSDVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIA
STDPEKAEMAKKRIEQITAEVEIGKVYEGPVTKILDFGALVNLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVLETDDKGRVKLSMKALTERPAGMEFSERPPREDRGDRGDRRE
RGDRGDRGERGGDRGGDRGERAPRFNNEQQQQPRSEAPAGEQPQQAAPREPQE
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcaacaaagtcaccaagtcgttccaatggggcggcaagaccgtggtcatg
gaaacgggcgaaatcgcccgccaggccagcggcgcagtgctcgtcgacatcgaaggcacc
gtcatcctcgcgaccgtggtcgcatccaagtcggccaagcccggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgccggcaagattcccggcagcttcttc
aagcgcgaagccaagcccagcgagcacgaaacgctgaccagccgcctgatcgaccgcccg
atccgcccgctgttccccgaaggcttcctgaacgaagtgcatgtggtcatccacaccatc
tcgctgaaccccgaagtcgatgccgacatcgccgccatgatcggcgtgagcgccgcgctg
tcgatctccggcgtgccgttcaacggcccgatcggtgccgcccgcgtgggttacatcaac
ggccagtacgtgctgaatccgggccagaccgctcgcaaggattcgcagatggacctcgtc
gtcgccggcacgcaagccgccgtgctgatggtcgaatccgaagccctgcaactgagcgaa
gaaatcatgctgggcggcgtggtgttcggccacgaacaggccaacatcgccatcgacgcg
atccatgaactcgtgcgcgacgccggcaagcccgtgtgggactggaaggcccccgccgaa
gacgaagccttcgtcgccaaggtcaaggggctggccgaagacaagctgcgcgccgtctac
cagatccgcagcaagcaggcgcgtacgcaagcactgcgcgaagccaacgccagcgtgctc
gaggccctgaaggctgaaggcaccgaattcgactccggcaaggtttccgatctgctgttc
gccatcgagtcgaagatcgtgcgcagccagatcctgtcgggcgagccgcgcatcgacggc
cgcgacacgcgcaccgtgcgccccatcgagatccgcaactcggtgctgccccgcacccac
ggctcggccctgttcacgcgcggcgaaacgcaggcgctggtcatcaccacgctcggcacc
gagcgcgacgcgcagcgcatcgacgcgctggctggcgagtacgaagaccgcttcctgttc
cactacaacatgcctcccttcgccaccggtgaagtgggccgcatgggctcgaccaagcgc
cgcgaaatcggccacggccgtctggccaagcgtgcgctcgtcgccgtgctgccgaacaag
gaagagttcccctacacggttcgcgtggtgtcggaaatcaccgagtcgaacggctcctcg
tcgatggcttcggtctgcggcggctgcctctcgatgatggatgccggcgtgcccatgaag
gcgcacgtggccggtatcgccatgggcctgatcaaggaagacaaccgcttcgcggtgctg
accgacatcctgggcgacgaagatcacctgggcgacatggacttcaaggtggccggcacg
accaacggcatcaccgccttgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgcactggcgcaggccaaggaagcgcgcatgcacatcctcggcaagatgcag
gaagcgatgggcgaggccaagtccgacgtgtcgcagttcgcgccgcgcctgaccacgctg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggcggcgcggtcatccgcggc
ctgcaggaagaaaccggcacgacgatcaacatcgacgaagacggcaccatcaccatcgcc
tcgaccgatccggaaaaggccgagatggccaagaagcgcatcgagcagatcacggcggaa
gtcgaaatcggcaaggtgtacgaaggcccggtcaccaagatcctggacttcggtgcgctc
gtgaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcgcacgaacgc
gtcgagaaggtgaccgactacctgagcgagggccagatcgtgaaggtcaaggtcctcgag
accgacgacaagggccgcgtcaagctgtccatgaaggccctgaccgagcgtccggccggc
atggaattcagcgagcgtccgccgcgcgaagaccgtggtgaccgtggcgatcgtcgtgag
cgcggcgaccgtggcgatcgcggcgagcgtggtggtgaccgcggcggcgaccgtggcgaa
cgcgctccgcgcttcaacaacgagcaacagcagcagccgcgcagcgaagctccggccggc
gagcagccgcagcaagcagctccgcgcgagcctcaggagtaa
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