Variovorax sp. W6: SFB74_13925
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Entry
SFB74_13925 CDS
T11181
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
vaw Variovorax sp. W6
Pathway
vaw02024
Quorum sensing
vaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFB74_13925 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SFB74_13925 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaw03019
]
SFB74_13925 (hfq)
03036 Chromosome and associated proteins [BR:
vaw03036
]
SFB74_13925 (hfq)
Messenger RNA biogenesis [BR:
vaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SFB74_13925 (hfq)
Chromosome and associated proteins [BR:
vaw03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
SFB74_13925 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
XVK61604
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All DBs
Position
3099021..3099284
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AA seq
87 aa
AA seq
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MNTENIVSNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQM
VYKHAISTIVPGRAVNFSATENDDAAA
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
ttgaacacggagaatatcgtgagcaataaagggcaacttctacaagacccgtttctgaac
accttgcgtcgcgagcatgtgccggtctccatttatctggtgaacggcatcaagctgcaa
ggacagatcgagtctttcgaccagtacgtcgtgctgcttcgcaacacggttacgcaaatg
gtctacaagcacgccatttccaccatcgtgccaggccgtgccgtcaacttctcggctacc
gagaacgacgacgccgcagcctga
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