KEGG   Variovorax sp. W6: SFB74_13925
Entry
SFB74_13925       CDS       T11181                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vaw  Variovorax sp. W6
Pathway
vaw02024  Quorum sensing
vaw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vaw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SFB74_13925 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SFB74_13925 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vaw03019]
    SFB74_13925 (hfq)
   03036 Chromosome and associated proteins [BR:vaw03036]
    SFB74_13925 (hfq)
Messenger RNA biogenesis [BR:vaw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     SFB74_13925 (hfq)
Chromosome and associated proteins [BR:vaw03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    SFB74_13925 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: XVK61604
LinkDB
Position
3099021..3099284
AA seq 87 aa
MNTENIVSNKGQLLQDPFLNTLRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQM
VYKHAISTIVPGRAVNFSATENDDAAA
NT seq 264 nt   +upstreamnt  +downstreamnt
ttgaacacggagaatatcgtgagcaataaagggcaacttctacaagacccgtttctgaac
accttgcgtcgcgagcatgtgccggtctccatttatctggtgaacggcatcaagctgcaa
ggacagatcgagtctttcgaccagtacgtcgtgctgcttcgcaacacggttacgcaaatg
gtctacaagcacgccatttccaccatcgtgccaggccgtgccgtcaacttctcggctacc
gagaacgacgacgccgcagcctga

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