Variovorax xiamenensis: SFB74_18790
Help
Entry
SFB74_18790 CDS
T11181
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vaw Variovorax xiamenensis
Pathway
vaw03030
DNA replication
vaw03430
Mismatch repair
vaw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFB74_18790 (dnaE)
03430 Mismatch repair
SFB74_18790 (dnaE)
03440 Homologous recombination
SFB74_18790 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaw03032
]
SFB74_18790 (dnaE)
03400 DNA repair and recombination proteins [BR:
vaw03400
]
SFB74_18790 (dnaE)
Enzymes [BR:
vaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SFB74_18790 (dnaE)
DNA replication proteins [BR:
vaw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SFB74_18790 (dnaE)
DNA repair and recombination proteins [BR:
vaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SFB74_18790 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
XVK56175
LinkDB
All DBs
Position
complement(4130003..4133521)
Genome browser
AA seq
1172 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDDVVKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKP
IVGAEAFVDGLGKEPGALTRIVLLVQNMEGYLNLSELLARAWTQNVGRGQSQAACKLEWL
QELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPEDEPH
VVAAVQLAARLHLPVVATHPVQFAEREDYEAHEARVCISEGEILGNPRRVRRFTEEQYFK
SSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFIAEGVRMPIDDFFRQE
SFEGLELRLKHLYPDEAKRDAERPRYVERLEFEINTILKMGFPGYFLIVGDFIQWAKNNG
CPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVI
DYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTLQY
PPEKKIEGDKNNYAIEMEPQLAERIEKEEEVKMLVELAQKLEGMTRNIGMHAGGVLIAPG
KLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQE
NFAFENIPLNDGPTYRLFSDGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGP
MDLIPSFVARKHGREDVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLR
RAMGKKKLEEMAEHREKFRAGALKTHGIEQDKADEIFDLMEKFAGYGFNKSHAAAYSLLA
YHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNYRFEPVT
NKIIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLYDFCVRIDRQRINKRTVEALIKAGA
FDAIQQNRASLVASLDRAFEFANATAANASQVDIFGDSEHGSATAEPDLVDATPWGVKER
LTLEKTAVGFYLSGHLFDEVSHEVRRFCKREITDLLDSRDQQVIAGIVSDFRVINGQRGR
LAIFKLDDKSDSIDATADEALINANRNTLKDDELVIVSGRLQPARGGFEARFQVQQVWDL
ASARCRFGKFLRVAVNGKAPDIARLLKDFPPRTEQTEVGDLIQGLPVRLSMARAGAQVEL
QLGDRAKFFPTDAALASWTAQAEAGKALIVYD
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgcctgcacaccgagttttccgtcgtcgacggcaccaaccgaatc
gacgatgtcgtcaaggccgccgctgccgacaagcagcctgcgctggccatcaccgacctg
aacaacctgttcggggccgtcaagttctacaaacagggccggggcaagggcgtcaagccc
atcgtcggcgccgaagccttcgtggacgggctgggcaaggagcccggcgcgctgacccgc
atcgtgctgctggtgcagaacatggagggctacctcaacctgtccgagctgctggcgcgg
gcttggacacagaacgtgggcaggggccagtcgcaggcggcctgcaagctggaatggctg
caggagctctcgggcgggctgatcgcgctctcgggcgcccaggcggggccgctggggcag
ccgctgctgcaggggcagggcgagcgcgccgccgaactggcgctgcagctggccggcatc
tttccgcaccgtttctacatcgagctgcagcgcgcgggccggcctgaagacgagccgcac
gtcgttgccgccgtgcagctcgcagcccggctgcacctgccggtggtcgccacgcacccg
gtgcagttcgccgagcgcgaggactacgaggcgcacgaggcgcgcgtgtgcatctcggaa
ggcgaaatcctcggcaacccgcgccgggtgcgccgtttcaccgaggagcagtatttcaag
tcgagcgccgagatgcaggcgcttttcgccgacgtgcccagcgcgctggccaacacggtc
gagatcgccaagcgctgcaacctgacgctggtgctgggcaagccgcagctgccggacttt
ccgacgcccttcatcgccgaaggcgtgcgcatgcccatcgacgacttcttccgtcaggag
tcgttcgaaggcctcgagttgcgcctgaagcacctctaccccgacgaggccaagcgcgac
gccgagcgcccgcgctacgtcgagcggctggagttcgagatcaacaccatcctgaagatg
ggcttccccggctacttcctgatcgtgggtgacttcatccagtgggccaagaacaacggc
tgcccggtgggcccgggccggggctcgggtgccggctcgctggtggcctacgcgctgaag
atcaccgacctcgacccgctcgaatacaagctgctgttcgaacgtttcctgaatcccgag
cgcgtctcgatgcccgacttcgacatcgacttttgccagggcaaccgcgaccgcgtgatc
gactacgtgaaggacaagtacggccgcaacgccgtgagccagatcgccaccttcggcacc
atggccgcgcgcgcggccatccgcgacgtgggccgcgtgctcgatatgagctacatgttc
tgcgacggcatcagcaagctgattccgaacaagcccggcatgtcggtcacgctgcagtac
ccgcccgagaagaagatcgagggcgacaagaacaactacgccatcgagatggagccgcag
ctcgcggagcgcatcgagaaggaagaagaagtcaagatgctggtcgagctcgcgcagaag
ctcgaaggcatgacccgcaacatcggcatgcacgccggcggcgtgctcatcgcgccgggc
aagctcaccgacttctgcccgctctaccagcagcccggcagcgaatcggctgtgagccag
tacgacaaggacgacgtcgaagccatcggcctagtgaagttcgacttcctgggtcttgcc
acgctcacgatcctggagatcgcgcgcgagttcatcatgaagcgccacaagggccaggag
aacttcgcgttcgagaacatcccgctgaacgacgggcccacctacaggctcttctccgac
ggcaagaccgaggccgtgttccagtttgaaagtcgcggcatgcagggcatgctgaaggac
gcgcgccccacgcgcctggaagacctgatcgcgctgaacgcgctgtaccgcccgggccct
atggacctgattcccagcttcgtggcgcgcaagcacggccgcgaggacgtggagtacccg
cacccggccgtggccgagatgctctccgagacctacgggatcatggtctaccaggagcag
gtgatgcagaccgcgcagatcctgggcggctactcgctcggcggcgccgacctgctgcgc
cgcgcgatgggcaagaagaagctcgaggagatggccgagcaccgcgagaaattccgcgcg
ggtgcgctcaagacccatggcatcgagcaggacaaggccgacgaaatcttcgacctgatg
gagaagttcgcgggctacggcttcaacaagtcgcacgccgccgcctactcgctgctggcg
tatcacacgggctggctcaaggtccactacacggccgagttcttctgcgccaacatgacc
gtggaaatggacgacacggacaagctcaagctgctgttcgaggacgcccagaagaatttc
ggcatcaccttcgagccgccggacgtgaaccgcggcaactaccgcttcgagccggtcacc
aacaagatcatccgctacggccttggcgccgtgaagggcacgggccagctcgcggtcgag
gccgtggtgcgcgcgcgcgaggagggcgggccgttcaagagcctgtacgacttctgcgtg
cgcatcgaccgccagcgcatcaacaagcgcaccgtggaagcgctcatcaaggccggcgcc
ttcgacgccatccagcagaaccgcgcatcgctggtcgcctcgctggaccgcgccttcgag
ttcgccaacgccacggcggccaacgcctcgcaggtcgacatcttcggcgactccgagcac
ggctccgccaccgccgagcccgacctggtcgacgccacgccctggggcgtgaaggaacgc
ctgacgctggagaagacggccgtcggcttctacctctcgggccacctgttcgacgaggtc
tcgcacgaggtgcggcgcttctgcaagcgcgagatcaccgacctgctcgacagccgcgac
cagcaggtcatcgccggcatcgtgagcgacttccgcgtcatcaacggacagcgcggccgg
ctcgcgatcttcaagctcgacgacaagtcggactccatcgatgccacggccgacgaggcg
ctcatcaacgccaaccgcaacacgctgaaggacgacgagctcgtcatcgtcagtggccgg
ctgcagcccgcgcgcggcggcttcgaggcgcgcttccaggtgcagcaggtgtgggacctg
gcctcggcgcgctgccgcttcggcaagttcctgcgcgtggcggtgaacggcaaggcgccc
gacatcgcgcgcctcttgaaggactttccgccgcgcaccgagcagaccgaggtgggcgac
ctgatccagggcctgccggtgcggttgtcgatggcgcgcgctggcgcgcaggtcgagctg
cagctgggcgaccgcgccaagttcttcccgaccgacgcggcgctggccagctggacagca
caggccgaagcgggcaaggcgctgatcgtctacgactga
DBGET
integrated database retrieval system
