Variovorax sp. PAMC28562: H7F36_00665
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Entry
H7F36_00665 CDS
T10649
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vax Variovorax sp. PAMC28562
Pathway
vax03410
Base excision repair
vax03430
Mismatch repair
vax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H7F36_00665 (recJ)
03430 Mismatch repair
H7F36_00665 (recJ)
03440 Homologous recombination
H7F36_00665 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vax03400
]
H7F36_00665 (recJ)
DNA repair and recombination proteins [BR:
vax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
H7F36_00665 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
H7F36_00665 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H7F36_00665 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QNK73827
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Position
142754..144475
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AA seq
573 aa
AA seq
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MKIVARIIPPRSAWALEQAGVHPLLARLYAARGVLGKDELDDGLARLLPPDTLRGTREAA
VLLADAIAADQRMCIVADYDCDGATACAVAVRGLRLLGAKNVSYLVPDRVIDGYGLTPPI
AERVADRGADLLITVDNGIASVDGVAAAQARGLKVLVTDHHLPGPQLPSAEVLVNPNQPG
CDFESKSIAGVGVMFYVLLALRSELRTRGVFTLANQPKLDVLLPLVALGTVADVVRLDAN
NRRLVAQGLRRIRAGSMQAGIAALFKASGRNAPTATTFDFGFALGPRINAAGRLADMTLG
IECLLTDDAARADELARTLDGINRERRDIEGGMRDQALLLAESLFDASGDSSEAPPPAIS
VFDAAFHEGVVGIVASRLKDRFHRPTFVFAASAAPGKEAELKGSGRSIPGFHLRDALDLV
AKRHPGVLLRFGGHAMAAGCTVASEHFETFCKAIAQVAQEWLAASSLVRQIDTDGPLARE
YLRVDLVDTLHREVWGQGFAPPTFSEEVEVLSQRLVGEKHLALKLRHQGRPIDGIWFGHT
DPLPAKVMLAFRLDADEWQGVRRVRFLVEGAEG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatcgttgcccggatcattccgccgcgcagcgcctgggcgctcgagcaggcaggc
gtgcatccgctgctcgcgcgcctgtatgcggctcgcggcgtgctcggcaaggacgaactc
gacgacggtctcgcgcgcctgctgccgcccgacacattgcgcggcacgcgcgaagccgcc
gtgctgctggccgacgccatcgcggcggaccagcgcatgtgcatcgtggccgactacgac
tgcgacggcgcgaccgcctgcgcagtcgccgtgcgcggtctgcgcctgctcggcgcgaag
aacgtgagctatctcgtaccggaccgcgtgatcgacggctacggcctgacgccgcccatc
gccgaacgcgtggccgaccgcggcgccgacctgctcattaccgtcgacaacggcatcgcc
agtgtcgacggcgtggccgcggcgcaggcgcgcggcctcaaggtgctcgtcaccgaccac
cacttgcccggcccgcagctgccatcggccgaagtgctggtcaacccgaaccagcccggc
tgcgacttcgaaagcaagagcatcgctggcgtcggcgtcatgttctatgtgctgctggct
ttgcgctccgagctgcgcacgcgcggcgtcttcacgctggcgaatcagccgaagctcgac
gtgttgctgcccctggtcgcgctcggcaccgtggccgacgtggtcaggctcgatgccaac
aaccgccgcctggtggcgcaggggttgcgccgcatccgtgcgggctcgatgcaggccgga
atcgcggcgctgttcaaggcgtccggtcgcaacgcacccacggccaccaccttcgacttc
ggctttgcgctcggcccgcgcatcaacgccgccgggcgcttggccgacatgacactcggc
atcgaatgcctgctcaccgacgacgccgcgcgcgccgacgagctggcacgcacgctcgac
ggcatcaaccgcgagcggcgcgacatcgagggcgggatgcgcgaccaggcgctgctgctg
gccgagtcgctattcgatgcgagtggcgacagcagcgaggcgccgccgccggccatcagc
gtgttcgatgcagcgtttcatgaaggcgtggtcggcatcgtcgcgtcgcgtctgaaggat
cgatttcatcggccgaccttcgtcttcgcggcgagcgcagcgccgggcaaggaagcggaa
ctcaaaggctcgggccgctccatcccaggcttccatctgcgcgacgcattggaccttgtt
gccaagcggcatcccggggtgctgctgcgcttcggcggccatgccatggcggcgggttgt
acggtggccagcgagcacttcgagaccttctgtaaagccatcgcacaggtcgcgcaagag
tggctcgccgcgtcgtcgctggtacgccagatcgacaccgacggtccattggcgcgcgag
tatctgcgcgtcgatctggtcgatacgttgcaccgcgaggtgtggggccagggctttgcg
ccgccgactttcagcgaagaggtcgaggtgctgtcgcagcggctcgtcggcgaaaagcac
ctggcgttgaagctgcgccatcaagggcggccgatcgacgggatctggttcggccatacc
gatccgttgcctgcgaaggtgatgctggcgtttcggctcgatgccgatgaatggcagggc
gtgcggcgggtgcgttttctggtcgagggggccgagggctag
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